Mp5g12930



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase
Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B;
PANTHER PTHR46132 DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC
CDD cd01635 Glycosyltransferase_GTB-type
Pfam PF00534 Glycosyl transferases group 1
FunFam G3DSA:3.40.50.2000:FF:000067 Digalactosyldiacylglycerol synthase 1, chloroplastic
KEGG K09480 digalactosyldiacylglycerol synthase [EC:2.4.1.241]
MapolyID Mapoly0092s0015 -
GO GO:0019375 galactolipid biosynthetic process
GO GO:0009707 chloroplast outer membrane
GO GO:0035250 UDP-galactosyltransferase activity
GO GO:0016757 glycosyltransferase activity
GO GO:0046481 digalactosyldiacylglycerol synthase activity

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

DGDG synthase; qPCR showed expression unchanged during Pi starvation, implying DGDG accumulates via a different mechanism.

0 core 1 peripheral

Shimojo, M., et al. (2023) · Planta  research experimental background
DGDG synthase; qPCR showed expression unchanged during Pi starvation, implying DGDG accumulates via a different mechanism.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g12930.1 chr5:16984154..16988966 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g12930 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g12930 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.