Mp5g15380
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. |
| NCBIfam | TIGR00756 | pentatricopeptide repeat |
| PANTHER | PTHR47936 | PPR_LONG DOMAIN-CONTAINING PROTEIN |
| Pfam | PF13812 | Pentatricopeptide repeat domain |
| Pfam | PF01535 | PPR repeat |
| MapolyID | Mapoly0071s0071 | - |
| GO | GO:0005515 | protein binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpPPR_45 | Pentatricopeptide repeat proteins | Published |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g15380 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g15380.1 ATGGCCGAGG TCTTCACCAG TAGTGAGTCG AACTTTCTAC GATCTTCGGG CGAGGACGAG AATGAGCGCT CGCCGCTGAT GGCTTTTTGT GAGAATTTTC CCGATGCTGT GGAGGCGGAG GAGTACTCGT TGAAGGACGA TGGAAGCGAG AGCAGAGTCG TAGGCCCGGC GCTCTCCACA GACTGGACAC GAAGTCAGAT GAGTGCCCAG AGTTGGAAGG ACAAGTTGAG AAAAGTGAAG AACAATCAAT GGTTTTCGGA TTTGGAACCC GGCCGACTGT GCATGGTCGA GCAGATCGTG GGCAGATTGC AATGTGCTGG AGTACACGGG TCGACATTGA ATTCTTCCAT GGCTCCACTC TCTCGGCTGG TGTCAGTGTG CGTAGCGACT CTAGTGTTTC GGAGATTGCC CTAGGTAAGG TCACGGATCC ACTAGGGTTT TACGACTGGA TGAAGAAGCA TCCATCCGGC CTCGAGGCGA ATCGCCCAAT GTATGCGCTC TTGCAATGCC ATCTGCAAAA GCGGCATTGG GCGGGGTTGG AAATCATCAT CATGTACAAG ATGGGGAGCA AGAAGAATTG CCTTGCAGAC GCTGCGCTTT ATAAGAAGAT GATCAAAATC GCCACTGATT ATGGCAATAC GAAGCTGGCA AACAAATGGC TACAGAAGAT GCTCTGGAGT GGTTTCGTTC CCAGTCTTCT CACCTGGAAT TTGGTCCTTG TTGCTTTCGC TCGAGATGGC CGGTTTGCCG AGGTCTTCTC TGTTTATGAG CAGCTGAAGG ATCACAATCG CCCTCCAGAA AGGATCATCT ACTGCGCGCT CCTTTCAGCT TGTCAAAATG CGGACAGGGT GCAAGAAGCA CAAGACATTG TGGCCCATAT GAAGTGCCGA GGTATGTAAC CAAATCGGAT CATGTACAGC GTTTTGGTCG ACCTTTATGG CAAAGCAGGG ATGCTAGATT CTGCAACTGC CACGTTTAGG GAAATGGAGA AAGCAGGTTA TGAGCCGGAT CAAGTAGCCT ACAACGCGCT CATTCACGCA TATGCGAGGG CGGGCTGAAT TGAAGACGCA AATGACGCAT TCGATCAAGC CATCAAACTG GGTGGCCGCA TCGATCCTGT TGTTTTCTCG ACCATGATCA ACATGTAAGC CAATGTGGGT TAAGTGGAAA GAGCCAGGGA TTTGCTGGAG GCGATGAAAG AGTTTCGGTT TGAAAAGAAG CACTGGCAGT GCGTTGTTTC AATTCTCATA AAAACTTACG CCAAGGTTGG GCAGCTGTGG GAACCTATTA AACTTTTTGA AGAGATGCAC GCTGTCGGGT ACCCTGTGAA TAACAGAATT CACACAACCA TGCTAAATGT GTACTTCAAA GTGGGTCGGC ATAGATGTGC AGAGGCACTT TTCCTGGACA TGATCGAGAC GGGGAAGTGC AGGAATATGG TAGCTTTTGG CACCATGATC AATATTTACG GGAGGATGGG AAGATGCCGT GCGTATTTTC ACTTCCTTGA AGGCTTCAGG CCTCAAGGGA AACACTGCTA TATACAACAC GCTAATTTAC TGCCATGGAA GGAATGGAAA TTTAATTGTT GTGGAGGAGT ATGTGAAGTA A |
mRNA UTR + CDS |
| >Mp5g15380.1 ATGGCCGAGG TCTTCACCAG TAGTGAGTCG AACTTTCTAC GATCTTCGGG CGAGGACGAG AATGAGCGCT CGCCGCTGAT GGCTTTTTGT GAGAATTTTC CCGATGCTGT GGAGGCGGAG GAGTACTCGT TGAAGGACGA TGGAAGCGAG AGCAGAGTCG TAGGCCCGGC GCTCTCCACA GACTGGACAC GAAGTCAGAT GAGTGCCCAG AGTTGGAAGG ACAAGTTGAG AAAAGTGAAG AACAATCAAT GGTTTTCGGA TTTGGAACCC GGCCGACTGT GCATGGTCGA GCAGATCGTG GGCAGATTGC AATGTGCTGG AGTACACGGG TCGACATTGA ATTCTTCCAT GGCTCCACTC TCTCGGCTGG TGTCAGTGTG CGTAGCGACT CTAGTGTTTC GGAGATTGCC CTAGGTAAGG TCACGGATCC ACTAGGGTTT TACGACTGGA TGAAGAAGCA TCCATCCGGC CTCGAGGCGA ATCGCCCAAT GTATGCGCTC TTGCAATGCC ATCTGCAAAA GCGGCATTGG GCGGGGTTGG AAATCATCAT CATGTACAAG ATGGGGAGCA AGAAGAATTG CCTTGCAGAC GCTGCGCTTT ATAAGAAGAT GATCAAAATC GCCACTGATT ATGGCAATAC GAAGCTGGCA AACAAATGGC TACAGAAGAT GCTCTGGAGT GGTTTCGTTC CCAGTCTTCT CACCTGGAAT TTGGTCCTTG TTGCTTTCGC TCGAGATGGC CGGTTTGCCG AGGTCTTCTC TGTTTATGAG CAGCTGAAGG ATCACAATCG CCCTCCAGAA AGGATCATCT ACTGCGCGCT CCTTTCAGCT TGTCAAAATG CGGACAGGGT GCAAGAAGCA CAAGACATTG TGGCCCATAT GAAGTGCCGA GGGATGCTAG ATTCTGCAAC TGCCACGTTT AGGGAAATGG AGAAAGCAGG TTATGAGCCG GATCAAGTAG CCTACAACGC GCTCATTCAC GCATATGCGA GGGCGGACGC AAATGACGCA TTCGATCAAG CCATCAAACT GGGTGGCCGC ATCGATCCTG TTGTTTTCTC GACCATGATC AACATAGCCA GGGATTTGCT GGAGGCGATG AAAGAGTTTC GGTTTGAAAA GAAGCACTGG CAGTGCGTTG TTTCAATTCT CATAAAAACT TACGCCAAGG TTGGGCAGCT GTGGGAACCT ATTAAACTTT TTGAAGAGAT GCACGCTGTC GGGTACCCTG TGAATAACAG AATTCACACA ACCATGCTAA ATGTGTACTT CAAAGTGGGT CGGCATAGAT GTGCAGAGGC ACTTTTCCTG GACATGATCG AGACGGGGAA GTGCAGGAAT ATGGTAGCTT TTGGCACCAT GATCAATATT TACGGGAGGA TGGGAAGATG CCGCCTCAAG GGAAACACTG CTATATACAA CACGCTAATT TACTGCCATG GAAGGAATGG AAATTTAATT GTTGTGGAGG AGTATGTGAA GTAA |
CDS |
| >Mp5g15380.1 ATGGTTTTCG GATTTGGAAC CCGGCCGACT GTGCATGGTC GAGCAGATCG TGGGCAGATT GCAATGTGCT GGAGTACACG GGTCGACATT GAATTCTTCC ATGGCTCCAC TCTCTCGGCT GGTGTCAGTG TGCGTAGCGA CTCTAGTGTT TCGGAGATTG CCCTAGGTAA GGTCACGGAT CCACTAGGGT TTTACGACTG GATGAAGAAG CATCCATCCG GCCTCGAGGC GAATCGCCCA ATGTATGCGC TCTTGCAATG CCATCTGCAA AAGCGGCATT GGGCGGGGTT GGAAATCATC ATCATGTACA AGATGGGGAG CAAGAAGAAT TGCCTTGCAG ACGCTGCGCT TTATAAGAAG ATGATCAAAA TCGCCACTGA TTATGGCAAT ACGAAGCTGG CAAACAAATG GCTACAGAAG ATGCTCTGGA GTGGTTTCGT TCCCAGTCTT CTCACCTGGA ATTTGGTCCT TGTTGCTTTC GCTCGAGATG GCCGGTTTGC CGAGGTCTTC TCTGTTTATG AGCAGCTGAA GGATCACAAT CGCCCTCCAG AAAGGATCAT CTACTGCGCG CTCCTTTCAG CTTGTCAAAA TGCGGACAGG GTGCAAGAAG CACAAGACAT TGTGGCCCAT ATGAAGTGCC GAGGGATGCT AGATTCTGCA ACTGCCACGT TTAGGGAAAT GGAGAAAGCA GGTTATGAGC CGGATCAAGT AGCCTACAAC GCGCTCATTC ACGCATATGC GAGGGCGGAC GCAAATGACG CATTCGATCA AGCCATCAAA CTGGGTGGCC GCATCGATCC TGTTGTTTTC TCGACCATGA TCAACATAGC CAGGGATTTG CTGGAGGCGA TGAAAGAGTT TCGGTTTGAA AAGAAGCACT GGCAGTGCGT TGTTTCAATT CTCATAAAAA CTTACGCCAA GGTTGGGCAG CTGTGGGAAC CTATTAAACT TTTTGAAGAG ATGCACGCTG TCGGGTACCC TGTGAATAAC AGAATTCACA CAACCATGCT AAATGTGTAC TTCAAAGTGG GTCGGCATAG ATGTGCAGAG GCACTTTTCC TGGACATGAT CGAGACGGGG AAGTGCAGGA ATATGGTAGC TTTTGGCACC ATGATCAATA TTTACGGGAG GATGGGAAGA TGCCGCCTCA AGGGAAACAC TGCTATATAC AACACGCTAA TTTACTGCCA TGGAAGGAAT GGAAATTTAA TTGTTGTGGA GGAGTATGTG AAGTAA |
Protein |
| >Mp5g15380.1 MVFGFGTRPT VHGRADRGQI AMCWSTRVDI EFFHGSTLSA GVSVRSDSSV SEIALGKVTD PLGFYDWMKK HPSGLEANRP MYALLQCHLQ KRHWAGLEII IMYKMGSKKN CLADAALYKK MIKIATDYGN TKLANKWLQK MLWSGFVPSL LTWNLVLVAF ARDGRFAEVF SVYEQLKDHN RPPERIIYCA LLSACQNADR VQEAQDIVAH MKCRGMLDSA TATFREMEKA GYEPDQVAYN ALIHAYARAD ANDAFDQAIK LGGRIDPVVF STMINIARDL LEAMKEFRFE KKHWQCVVSI LIKTYAKVGQ LWEPIKLFEE MHAVGYPVNN RIHTTMLNVY FKVGRHRCAE ALFLDMIETG KCRNMVAFGT MINIYGRMGR CRLKGNTAIY NTLIYCHGRN GNLIVVEEYV K |