Mp5g16770
Description
Annotation
| Database | ID | Description |
|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| SUPERFAMILY | SSF81383 | F-box domain |
| PANTHER | PTHR31215 | OS05G0510400 PROTEIN-RELATED |
| Pfam | PF12937 | F-box-like |
| SUPERFAMILY | SSF52047 | RNI-like |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor |
| MapolyID | Mapoly0117s0029 | - |
| GO | GO:0005515 | protein binding |
Nomenclature
No gene symbols are registered for this gene.
Associated Literature (AI-based literature mining, Beta-version)
Second validated target of MpmiR11737a, encoding an F-box-like domain superfamily protein. Its mRNA is upregulated in reproductive organs, consistent with miRNA-mediated regulation.
1 core 0 peripheral
Aggarwal, B., et al. (2024)
· RNA Biology research experimental subject
Second validated target of MpmiR11737a, encoding an F-box-like domain superfamily protein. Its mRNA is upregulated in reproductive organs, consistent with miRNA-mediated regulation.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g16770 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g16770.1 ATGGCTTCAA CGTCTTCCCC GATGGTTATC GATCGAGACT CATCGCTGGC TCGCATGGAG GTCGTTACCA CAAGCAGCAG CAGCAGCAAC GGCGGCGGCG GCAGAAGCTG CTCGCTGGCC TCCAGACCCG TGGAGCAAGG CGATGCACTC GAATCTAACA TTCTGTCTTC TTCCATGGAT ATGGCAAACG CGAAACAGTG TGTGAGCATG GAGGACATTC TTCCCAACGC TCTGCTGGGA GAGATTTTCT CGCACCTGTG CGATGCGCGA GACTTGTCTC GCGCTGCTCT GGTGAACTCG TCATTTCGCA CGCAGTGCAA GTTTGCCAAA AATGTGCGGT TCAATTGCAA ACTGCAGAAC GTGTCCAAGA AACCCGCCAA GGATGGGGTG GTGGCGCCTG CGGTCACACC ATTCAAGCAG ACTGTGCTCA GCATGGTAAA GAACCTGACG TGTGTGGAAA CGCTGCGGCT GGAGATCGAT GAGAATGTAC AGCAGAGCAG GTTCAAGGAG GATGAGGTCG ATAGAGCTAG TCTGTGGCTT AGTGAGAGTT CTTTCGTTAA CAGCTGGCTG CCTCCGGTGA GCGAAACTCT GACCAGTCTC ACGCTCATCG ATTACGGGCC GCAGGCAATA TTTCACTCGT CGCCGTTGCT TCCGCTTCTG TCCAAGCACT GCCAGCAGTT GCGGAGGCTG GAGCTGCGCA ATATGTTTCT GGATTCCAAG GGATGCAGCA AGATGAACAA GGTCACATAC TTGAGCTTGA AATGCGTGAA GCTGATGGAG AATGGATTGC AAGACATAAG CGAGATGATG CCCAACCTGG AGCACATCAT ATTCCAGACG GTGGTAGGGC TCGTCGAGGC CAGGCTCAAG TCCGATTGTT TGAAGCTGCT GTGTTTGACC TTTGCCACAA GAGTCCAGGC TGTAAAGCTC GAGTCTACGT CGCTCAAAAC ATTGCAGTTG AAGATGGTGC AGTGTCCAGC TGAACTTAGG GTCAAAGCCC CTAACTTGGA GGCTCTGGCG CTCAGGATGA CCAAAGGAGA CAGGTGCGTG GTGGAATTCG AAGGAGTCCG GAAATTGAAA GAGGTTCTGA TGGGGGGCCA CGAGCTCTCC ATTCTGCAGA AGCTGAGCTC CCAGAATCGT TCCATTCAGA AGGCATTTCT GGACGTTCCG TGCATGATAT TCGACGACGT TGGGGCCTGG CGGGGAGTGA AGCCGCTTCC ACCACCGCTT GAAGGTTCTC CTCCTCGTCC CACAATTGAA GGATTGAGAA GCTGCTGCTC AGGGATGAAT AGCTTGAGCG TGGGGCCTGG CTTGTGGCAC TGCCTGGAGC AGGGCATAAT TTCCAGCGCC GAGGGGGCAC CAGTAGTATT TCATCCGTGG ACGTCATTGA CGAGGCTGAT TTTGCACTTG GTGCTCCAGG ACAAGAAAGT GTGTTACGGC CTATTGATCT CTCTGGTCTC AGCCATGCCT CACCTGAGCC TGCTCGAAGT GTATGTGCAC GGTGAGGATA AAATTGAAGC GGACGAAATG CGACTACGGC TAGTGGATCA ATTTCCCAAA CTGGTTTTGA CGTGTGACAG TTGGATTAGG TCCATGAAAT TTGACGCCTT TGATGATGTA AAAAAACAAG GGGGTTGA |
mRNA UTR + CDS |
| >Mp5g16770.1 ATGGCTTCAA CGTCTTCCCC GATGGTTATC GATCGAGACT CATCGCTGGC TCGCATGGAG GTCGTTACCA CAAGCAGCAG CAGCAGCAAC GGCGGCGGCG GCAGAAGCTG CTCGCTGGCC TCCAGACCCG TGGAGCAAGG CGATGCACTC GAATCTAACA TTCTGTCTTC TTCCATGGAT ATGGCAAACG CGAAACAGTG TGTGAGCATG GAGGACATTC TTCCCAACGC TCTGCTGGGA GAGATTTTCT CGCACCTGTG CGATGCGCGA GACTTGTCTC GCGCTGCTCT GGTGAACTCG TCATTTCGCA CGCAGTGCAA GTTTGCCAAA AATGTGCGGT TCAATTGCAA ACTGCAGAAC GTGTCCAAGA AACCCGCCAA GGATGGGGTG GTGGCGCCTG CGGTCACACC ATTCAAGCAG ACTGTGCTCA GCATGGTAAA GAACCTGACG TGTGTGGAAA CGCTGCGGCT GGAGATCGAT GAGAATGTAC AGCAGAGCAG GTTCAAGGAG GATGAGGTCG ATAGAGCTAG TCTGTGGCTT AGTGAGAGTT CTTTCGTTAA CAGCTGGCTG CCTCCGGTGA GCGAAACTCT GACCAGTCTC ACGCTCATCG ATTACGGGCC GCAGGCAATA TTTCACTCGT CGCCGTTGCT TCCGCTTCTG TCCAAGCACT GCCAGCAGTT GCGGAGGCTG GAGCTGCGCA ATATGTTTCT GGATTCCAAG GGATGCAGCA AGATGAACAA GGTCACATAC TTGAGCTTGA AATGCGTGAA GCTGATGGAG AATGGATTGC AAGACATAAG CGAGATGATG CCCAACCTGG AGCACATCAT ATTCCAGACG GTGGTAGGGC TCGTCGAGGC CAGGCTCAAG TCCGATTGTT TGAAGCTGCT GTGTTTGACC TTTGCCACAA GAGTCCAGGC TGTAAAGCTC GAGTCTACGT CGCTCAAAAC ATTGCAGTTG AAGATGGTGC AGTGTCCAGC TGAACTTAGG GTCAAAGCCC CTAACTTGGA GGCTCTGGCG CTCAGGATGA CCAAAGGAGA CAGGTGCGTG GTGGAATTCG AAGGAGTCCG GAAATTGAAA GAGGTTCTGA TGGGGGGCCA CGAGCTCTCC ATTCTGCAGA AGCTGAGCTC CCAGAATCGT TCCATTCAGA AGGCATTTCT GGACGTTCCG TGCATGATAT TCGACGACGT TGGGGCCTGG CGGGGAGTGA AGCCGCTTCC ACCACCGCTT GAAGGTTCTC CTCCTCGTCC CACAATTGAA GGATTGAGAA GCTGCTGCTC AGGGATGAAT AGCTTGAGCG TGGGGCCTGG CTTGTGGCAC TGCCTGGAGC AGGGCATAAT TTCCAGCGCC GAGGGGGCAC CAGTAGTATT TCATCCGTGG ACGTCATTGA CGAGGCTGAT TTTGCACTTG GTGCTCCAGG ACAAGAAAGT GTGTTACGGC CTATTGATCT CTCTGGTCTC AGCCATGCCT CACCTGAGCC TGCTCGAAGT GTATGTGCAC GGTGAGGATA AAATTGAAGC GGACGAAATG CGACTACGGC TAGTGGATCA ATTTCCCAAA CTGGTTTTGA CGTGTGACAG TTGGATTAGG TCCATGAAAT TTGACGCCTT TGATGATGTA AAAAAACAAG GGGGTTGA |
CDS |
| >Mp5g16770.1 ATGGCTTCAA CGTCTTCCCC GATGGTTATC GATCGAGACT CATCGCTGGC TCGCATGGAG GTCGTTACCA CAAGCAGCAG CAGCAGCAAC GGCGGCGGCG GCAGAAGCTG CTCGCTGGCC TCCAGACCCG TGGAGCAAGG CGATGCACTC GAATCTAACA TTCTGTCTTC TTCCATGGAT ATGGCAAACG CGAAACAGTG TGTGAGCATG GAGGACATTC TTCCCAACGC TCTGCTGGGA GAGATTTTCT CGCACCTGTG CGATGCGCGA GACTTGTCTC GCGCTGCTCT GGTGAACTCG TCATTTCGCA CGCAGTGCAA GTTTGCCAAA AATGTGCGGT TCAATTGCAA ACTGCAGAAC GTGTCCAAGA AACCCGCCAA GGATGGGGTG GTGGCGCCTG CGGTCACACC ATTCAAGCAG ACTGTGCTCA GCATGGTAAA GAACCTGACG TGTGTGGAAA CGCTGCGGCT GGAGATCGAT GAGAATGTAC AGCAGAGCAG GTTCAAGGAG GATGAGGTCG ATAGAGCTAG TCTGTGGCTT AGTGAGAGTT CTTTCGTTAA CAGCTGGCTG CCTCCGGTGA GCGAAACTCT GACCAGTCTC ACGCTCATCG ATTACGGGCC GCAGGCAATA TTTCACTCGT CGCCGTTGCT TCCGCTTCTG TCCAAGCACT GCCAGCAGTT GCGGAGGCTG GAGCTGCGCA ATATGTTTCT GGATTCCAAG GGATGCAGCA AGATGAACAA GGTCACATAC TTGAGCTTGA AATGCGTGAA GCTGATGGAG AATGGATTGC AAGACATAAG CGAGATGATG CCCAACCTGG AGCACATCAT ATTCCAGACG GTGGTAGGGC TCGTCGAGGC CAGGCTCAAG TCCGATTGTT TGAAGCTGCT GTGTTTGACC TTTGCCACAA GAGTCCAGGC TGTAAAGCTC GAGTCTACGT CGCTCAAAAC ATTGCAGTTG AAGATGGTGC AGTGTCCAGC TGAACTTAGG GTCAAAGCCC CTAACTTGGA GGCTCTGGCG CTCAGGATGA CCAAAGGAGA CAGGTGCGTG GTGGAATTCG AAGGAGTCCG GAAATTGAAA GAGGTTCTGA TGGGGGGCCA CGAGCTCTCC ATTCTGCAGA AGCTGAGCTC CCAGAATCGT TCCATTCAGA AGGCATTTCT GGACGTTCCG TGCATGATAT TCGACGACGT TGGGGCCTGG CGGGGAGTGA AGCCGCTTCC ACCACCGCTT GAAGGTTCTC CTCCTCGTCC CACAATTGAA GGATTGAGAA GCTGCTGCTC AGGGATGAAT AGCTTGAGCG TGGGGCCTGG CTTGTGGCAC TGCCTGGAGC AGGGCATAAT TTCCAGCGCC GAGGGGGCAC CAGTAGTATT TCATCCGTGG ACGTCATTGA CGAGGCTGAT TTTGCACTTG GTGCTCCAGG ACAAGAAAGT GTGTTACGGC CTATTGATCT CTCTGGTCTC AGCCATGCCT CACCTGAGCC TGCTCGAAGT GTATGTGCAC GGTGAGGATA AAATTGAAGC GGACGAAATG CGACTACGGC TAGTGGATCA ATTTCCCAAA CTGGTTTTGA CGTGTGACAG TTGGATTAGG TCCATGAAAT TTGACGCCTT TGATGATGTA AAAAAACAAG GGGGTTGA |
Protein |
| >Mp5g16770.1 MASTSSPMVI DRDSSLARME VVTTSSSSSN GGGGRSCSLA SRPVEQGDAL ESNILSSSMD MANAKQCVSM EDILPNALLG EIFSHLCDAR DLSRAALVNS SFRTQCKFAK NVRFNCKLQN VSKKPAKDGV VAPAVTPFKQ TVLSMVKNLT CVETLRLEID ENVQQSRFKE DEVDRASLWL SESSFVNSWL PPVSETLTSL TLIDYGPQAI FHSSPLLPLL SKHCQQLRRL ELRNMFLDSK GCSKMNKVTY LSLKCVKLME NGLQDISEMM PNLEHIIFQT VVGLVEARLK SDCLKLLCLT FATRVQAVKL ESTSLKTLQL KMVQCPAELR VKAPNLEALA LRMTKGDRCV VEFEGVRKLK EVLMGGHELS ILQKLSSQNR SIQKAFLDVP CMIFDDVGAW RGVKPLPPPL EGSPPRPTIE GLRSCCSGMN SLSVGPGLWH CLEQGIISSA EGAPVVFHPW TSLTRLILHL VLQDKKVCYG LLISLVSAMP HLSLLEVYVH GEDKIEADEM RLRLVDQFPK LVLTCDSWIR SMKFDAFDDV KKQGG |