Mp5g16850
Description
Annotation
| Database | ID | Description |
|---|---|---|
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. |
| PANTHER | PTHR46128 | MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 |
| Pfam | PF13041 | PPR repeat family |
| Pfam | PF12854 | PPR repeat |
| NCBIfam | TIGR00756 | pentatricopeptide repeat |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain |
| Coils | Coil | Coil |
| FunFam | G3DSA:1.25.40.10:FF:000558 | Pentatricopeptide repeat-containing protein At5g39710 |
| KOG | KOG4422 | Uncharacterized conserved protein; N-term missing; C-term missing; [S] |
| MapolyID | Mapoly0117s0021 | - |
| GO | GO:0005515 | protein binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpPPR_54 | Pentatricopeptide repeat proteins | Published |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g16850 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g16850.1 CTCAACGTTA AACCCCGACC TGAAGCCAAA ACGCACAAAG CCTCTAAACC CCCGTTCTGG ACTCTGAAAT TGCACTTCTG GGAAGCAGCA GATTGCAATC CGATCTGCGT CGAAGGCCTA TTTTTCTCTC GACAATGTTC GATTGTTGGG CGATGACGCG CGAAACTTTT CTCCGGATCC CGAGAAACTT GTCTTCTTCA CAGCCATGGT TGCAGAAGGG GTGATGGGTG TGGTGGGAAC ATTTAACACC TTGGCTTCTT GAGTTCGAGG AATTCGCTGT GATTGAGCTG CTGTGAGTTC TTCAGTGCTA TCAGCATCGG GAATCGAGGA ATTTAGTAGG ATGAGAGCCT CAGTACAGAG CAGAGTGTTC CAGATGATGT CTCAGATTTT AGGGTACCCC AGTCGTATCG GACCAGGCAA CGGATGTGCC CCACAGATGG GAAGAGCTTT CAGTGCTTCT TCGAGTTTAG GAGAAAGAAA GCAGGATATC TTCTCTAGCT TAGGATTGGG AACTTATGAT GGTGCATCGG GTATGATGTT GAGGCAAGAA TGCGAGAAGT CCGAGATTGC TGGAAGATTT ATGGATCGCC ACTCACCTGC TGTACTGCTG TTGAAAAACC AGTGCGGAGT CGGACGATCG AAGCGAATGG AGATAAGCAC AAACAATCAG CAGCAGGAGG AGTCACTGCC CACTGTTTAT GCTCATAATC GACTGATAAG TGTCTTGATG GAGGGAGGGT ATCATGAGGA GGCGTACCAC ATATATCAAG ATATGCTGCT GGAAACTTGC AAGCCTGACT CCCATACATA CGTTCGGTTA ATCATGGGAT TTTGTAGGGC CGGGAGGATC GAAGAAGCAT ATGGGATTTT TCAGGATATG AAAAACCAGA ACTGTGAATC TAAAGGTATT GTGTACAATG CCATGATACA TGCGGTTGGG ACAGCGGGTC TTGTATCCGA AGCTTTAAAG CTGTTGGATG AAATGACAGA AGCAGATTGC TCTCCGGACA CATGGACGTA CAATAGTGTC ATACATAGCC TAGGCAAAGT AGGTGATGTG AATCACGCTC TACGTCTCCT GGAGACCATG CACGTCAATG GCTGCAATCC GGACGTAATT ACCTACAACT CGCTGATTTC CTCATTAGGC AAGTGCGGAC GAGTTGTGGA AGCATGCAAG TTGTATGAAG GGATGGTTGA AAAAGGTTGT CTACCTGACG TTGTTACTTA TAACACCCTT ATTCCAGTAC TTTGCAAGGC TGGTGAATTT TCTGCCGCTC TTAATTTGTT TAAGTTTATG CAATCTGTGG GATGTCGGCC CGATGTCTTT ACATACAGTT CTTTGGTAGT AGGTCTGTGC AGAGCAGACA GAGTAGACGA TGCCTTGCGT CTATCAAGTC AGATGACTCT CAGTGGATGC TCTCCGAACA CAGTTACATT CAACTCTTGG TTGGATGGAC TTTGCAAGGA GGGCCGAGTA AGAGAGGCGC AGGTGCTTTA CCAGAAAATG TTGACACTAG GATATATTCC TGATGTTATT ACGTTCTCCA TACTCATAGA TGCCTTTTGC AAGAGTGGTG AATATCTGGA AGAGGCCTTT AAGCTGCTGA AACTCATCGT GAAAAAACCG GACACCGTGG ATGTCCGTAC ACGTGACATT ATTCATAATA GTTTCATGAG AGTGGGCATG ATGAAACAAG CAAAGCGGAT CATGAGGAAC GCCCGGCACA AGCGGGTCAG GTTGCAAAAT CAAGCTGGAG ATGTAAAACA CATGTAGAAA TGTTTGGATC GCAACTGCGG GGGTTCTGAG CTATCTGTAG CCAGCAAGGT GTTTGCGGTC TACATGATCA GATCATGAAT ATAAAAAGTT ATCGAGAGGG TTCTGCAGTG GATGATTCTG GAAACAGCCG TGTTTAGCTC GAGCTTCGAG CGAAATTGTA AAAAATTTGA GTCTTGGATG AAAGATTATC AGCCTGATTT GATCCTCACA ACATCAGCAG TGCCACAGAC GAAGAGGTTG CAGAGGCTGT TTCCCTGTCA TCTTGCACAG TTACTTCGGC GTCAGCTTCA CCTTAGAAGT TTGTGAAGAA ATAGGTGGCC GATGAAACTC AGGCGGGGAA GGTTTCGTGC ATTATGGCGT CACTGGTATT TTGTTCATAT TCTCAAACTT TAAACTGTTC TCTCATACGT ATTTCATTTT GAGTTCGATT TCCAGTAAAG GACCTCAACA CAGAAAGCCT TCATATTGAA GTATCTTGAG TTTCCCAAGC GATTCGGTGT AGATGACAAG TGCTCTTAGT CAATGCGGAT GATGGCAGGA ATAATAATGT TCCCAGACCT GCTTGACTGG GAAATAAAAC TGCACAGTAT TATACCAATG GTGAATCTTT GTATTTGTAT CCCAGATATC TGTAGATGAA GTTTATGATT TGGTCTCTTG GGTTGTATTT TCCTCTTAGT CCTGGTTTTT AGTCTCACTT ATGTTGTCAG CCGTACTGCT GCCAGCCTCA CCAGTTAGTA ACGTTTCTTC GTGTCCCTTA TCTGATAGTC GAAAGGAATG TCTTCCTCGT CTTCAAAGTC ATATGTTTCA ACTTGCTGTT GATATTCTGC AATCTTTAGT TTTCCGTTCT TGACATCATA TGCCCTATTC TTCCAGTTAT GTGGCTTCTT ATCTAAATTA GCATTTCCTT TTTCCCGCAG GTGAAGATTG CATAGACTAC AGTTCTATGC AATCTTATCA GACGAACACA ATATCATTTT CCGCCATCAT GTCAGCGATG GGGCAAACAG CAGCTCCGAC TACTTTTACC GCCGGAGTAA TCAGGTATAC CAATAGCTTA AGTGCCGATC CTTCTGCTGT GTCTCGTCCT TTAAGAAACT TCAAGTTGGA CATCTATCTT CTAACAAGGA AGGAAAGATC TTGATTGATA TAGTCGTTGC GGGACTAAGC GGAAGGGTCG GACGGTCTTT TCAGAGAAGA TATTCTTCAT GAACCATCAG AGGACGTCCT AGCCGATGAA ATCTGTTCTT TGTTACCCCC TTGTTTGCTA CGAAAGTGTT TTGACCATAA GACTGAAATT CTTTTTTCTT TTTCTGTACC AAATAAAATT ATACGTCACT TGGCAAGGGC TCGGGAGGCA CACACCAATG TGACTTACTC GCGGTTGTAG AGTATCTGTT CGCACACTGT CTTTCTGTGA TGCGTAAGTG ATGGGGTGTG AACTAGTTGC AGTTGTAGGG GTGTGGAGTT ACACTAGAGT AGACCGGTCA GTTTTCACTG TTAACTACTC CTTGCAGCCG TTTCTTCTTG CTTTTATGTT CCTTTGCTGT CTGAAGATGT CCTCCTGCTT TGAGTGATGG ACTTCTTTCT ACTTTCAGTT CACATTTTAC CACTTGCGAT CCGGGGTCTC TGGTCTCCCC AAACTCCCAG TCCGAAATTT TCCTCAAACT CTTCTCAAAT ATCTCAAACT TTGACAACAG TTATAATGTT CCAAAGCAAG TGCCTCATAG TGCATTTCCC TTTCCTCCTA CTGACCTTGA AAGTCTGGAA GTGAAGTCGA AGGTCAAGTT CTAATCTCTT CTCAAAGCAG CAGGTTTGTG GGAGAAGACA CAGGCTAGAC TGTACTCAAA AGGCATCACT GAGTGCAGTC TGCAACGACT ATTTAGAATT CATTTTGAAT TTCTACATTA GCAGATTTGT CACTTACACC TATATCCATC GTATGTGGCC TGCCTGACGT GGAGCTTGCC ATGCGCTTGT TTATTTCACT GTCGTCGAGA GCACTAATTA GTGCAAGTGC TAATTGCAGT ATTCCTGTTT GAAGGCAGAG GAAAGTCTTG CCATGATTGT TCTTCAGAGT GCGAGCATTT GTTCTGGAGA AACTGATATG TGTTAAAACT GCAGAGCACG ATTTGTGGAC TTCACGCAAA AGCTAGTGAG CTACTCGTCC GTCTCGCGGG ATTCCGGGCA ACTCCTGCTG GTGACCTTTT TGGCGAACCT CCCTGTTCCT TGTTGGCTCC GCGTCGGGTT TTTGTGTGAA AGGCAAAAGG GCAGGCAAAA ACAATCCTCA AAGGTGAAAA CTTTCAGCTA CGAGGGCAAA ACGCTAGGAG GAAGGAGGAT GGACAAAGAG TGTACGTTAG ATTATCAAAG TGTGGGTGGG TAGTTAGAGT ATGGGACCAC GTCGGGACCA TCGGTTCCGA GGACACATCG GAATACGGAG ATGCGACGAA ATTGTAAATC TTATCTTAAG AGATGCAGGA CGGGTCATTT TTTGAGAAAA AAAAGATGAT GTATTTAGAG AAGCTTTTGC TTGGATCTTG GTAGAGAGCA TCACGTGGAT GGGCAACGCC TACCTGCAAT AGGAATAAGG ACACTTGGAA GGTGATCTGG TAGGTGGGCT CGATTTTATT CCATATACGA TTTTCTCTCG ATTTTCTCTC CATATTGCGT ACTGCTCTGT AGAGGAGTTC TGCAGACCTA TGGCCAGCCA GCGAATTCTC AACGCTGCGA TGATGCCGAA TTATACTGTA TTATGAGACT CTTGAAAATG CAGCGAGTAT TCGGACAGGG TGGACAATAC TGACGCCTGG ACCTATGCAC ACTACCTGTC CTCAAGTCCG AGCGGTGGTA GAATACGGAG TGCCTAGAGC TTGGTGATTC ATGGAAAATG TCTCCATTTA CAACGTTTTG TTTCGCTTCC CGTCACTTTA CAAATGCGAG AGGAACTAAA GAGACCTGAT TATTTCTCAG ACTCTGCTAC AATTCTCGTG TTTTTCTCTT GCAATAATGT AAGTTTCCGA TCATGAATCA GATGTTTCGA ATCACATCAG ATTTTTTTAA TTGCCAA |
mRNA UTR + CDS |
| >Mp5g16850.1 CTCAACGTTA AACCCCGACC TGAAGCCAAA ACGCACAAAG CCTCTAAACC CCCGTTCTGG ACTCTGAAAT TGCACTTCTG GGAAGCAGCA GATTGCAATC CGATCTGCGT CGAAGGCCTA TTTTTCTCTC GACAATGTTC GATTGTTGGG CGATGACGCG CGAAACTTTT CTCCGGATCC CGAGAAACTT GTCTTCTTCA CAGCCATGGT TGCAGAAGGG GTGATGGGTG TGGTGGGAAC ATTTAACACC TTGGCTTCTT GAGTTCGAGG AATTCGCTGT GATTGAGCTG CTGTGAGTTC TTCAGTGCTA TCAGCATCGG GAATCGAGGA ATTTAGTAGG ATGAGAGCCT CAGTACAGAG CAGAGTGTTC CAGATGATGT CTCAGATTTT AGGGTACCCC AGTCGTATCG GACCAGGCAA CGGATGTGCC CCACAGATGG GAAGAGCTTT CAGTGCTTCT TCGAGTTTAG GAGAAAGAAA GCAGGATATC TTCTCTAGCT TAGGATTGGG AACTTATGAT GGTGCATCGG GTATGATGTT GAGGCAAGAA TGCGAGAAGT CCGAGATTGC TGGAAGATTT ATGGATCGCC ACTCACCTGC TGTACTGCTG TTGAAAAACC AGTGCGGAGT CGGACGATCG AAGCGAATGG AGATAAGCAC AAACAATCAG CAGCAGGAGG AGTCACTGCC CACTGTTTAT GCTCATAATC GACTGATAAG TGTCTTGATG GAGGGAGGGT ATCATGAGGA GGCGTACCAC ATATATCAAG ATATGCTGCT GGAAACTTGC AAGCCTGACT CCCATACATA CGTTCGGTTA ATCATGGGAT TTTGTAGGGC CGGGAGGATC GAAGAAGCAT ATGGGATTTT TCAGGATATG AAAAACCAGA ACTGTGAATC TAAAGGTATT GTGTACAATG CCATGATACA TGCGGTTGGG ACAGCGGGTC TTGTATCCGA AGCTTTAAAG CTGTTGGATG AAATGACAGA AGCAGATTGC TCTCCGGACA CATGGACGTA CAATAGTGTC ATACATAGCC TAGGCAAAGT AGGTGATGTG AATCACGCTC TACGTCTCCT GGAGACCATG CACGTCAATG GCTGCAATCC GGACGTAATT ACCTACAACT CGCTGATTTC CTCATTAGGC AAGTGCGGAC GAGTTGTGGA AGCATGCAAG TTGTATGAAG GGATGGTTGA AAAAGGTTGT CTACCTGACG TTGTTACTTA TAACACCCTT ATTCCAGTAC TTTGCAAGGC TGGTGAATTT TCTGCCGCTC TTAATTTGTT TAAGTTTATG CAATCTGTGG GATGTCGGCC CGATGTCTTT ACATACAGTT CTTTGGTAGT AGGTCTGTGC AGAGCAGACA GAGTAGACGA TGCCTTGCGT CTATCAAGTC AGATGACTCT CAGTGGATGC TCTCCGAACA CAGTTACATT CAACTCTTGG TTGGATGGAC TTTGCAAGGA GGGCCGAGTA AGAGAGGCGC AGGTGCTTTA CCAGAAAATG TTGACACTAG GATATATTCC TGATGTTATT ACGTTCTCCA TACTCATAGA TGCCTTTTGC AAGAGTGGTG AATATCTGGA AGAGGCCTTT AAGCTGCTGA AACTCATCGT GAAAAAACCG GACACCGTGG ATGTCCGTAC ACGTGACATT ATTCATAATA GTTTCATGAG AGTGGGCATG ATGAAACAAG CAAAGCGGAT CATGAGGAAC GCCCGGCACA AGCGGGTCAG GTTGCAAAAT CAAGCTGGAG ATGTAAAACA CATGTAGAAA TGTTTGGATC GCAACTGCGG GGGTTCTGAG CTATCTGTAG CCAGCAAGGT GTTTGCGGTC TACATGATCA GATCATGAAT ATAAAAAGTT ATCGAGAGGG TTCTGCAGTG GATGATTCTG GAAACAGCCG TGTTTAGCTC GAGCTTCGAG CGAAATTGTA AAAAATTTGA GTCTTGGATG AAAGATTATC AGCCTGATTT GATCCTCACA ACATCAGCAG TGCCACAGAC GAAGAGGTTG CAGAGGCTGT TTCCCTGTCA TCTTGCACAG TTACTTCGGC GTCAGCTTCA CCTTAGAAGT TTGTGAAGAA ATAGGTGGCC GATGAAACTC AGGCGGGGAA GGTTTCGTGC ATTATGGCGT CACTGGTGAA GATTGCATAG ACTACAGTTC TATGCAATCT TATCAGACGA ACACAATATC ATTTTCCGCC ATCATGTCAG CGATGGGGCA AACAGCAGCT CCGACTACTT TTACCGCCGG AGTAATCAGA GCACGATTTG TGGACTTCAC GCAAAAGCTA GTGAGCTACT CGTCCGTCTC GCGGGATTCC GGGCAACTCC TGCTGGTGAC CTTTTTGGCG AACCTCCCTG TTCCTTGTTG GCTCCGCGTC GGGTTTTTGT GTGAAAGGCA AAAGGGCAGG CAAAAACAAT CCTCAAAGGT GAAAACTTTC AGCTACGAGG GCAAAACGCT AGGAGGAAGG AGGATGGACA AAGAGTGTAC GTTAGATTAT CAAAGTGTGG GTGGGTAGTT AGAGTATGGG ACCACGTCGG GACCATCGGT TCCGAGGACA CATCGGAATA CGGAGATGCG ACGAAATTGT AAATCTTATC TTAAGAGATG CAGGACGGGT CATTTTTTGA GAAAAAAAAG ATGATGTATT TAGAGAAGCT TTTGCTTGGA TCTTGGTAGA GAGCATCACG TGGATGGGCA ACGCCTACCT GCAATAGGAA TAAGGACACT TGGAAGGTGA TCTGGTAGGT GGGCTCGATT TTATTCCATA TACGATTTTC TCTCGATTTT CTCTCCATAT TGCGTACTGC TCTGTAGAGG AGTTCTGCAG ACCTATGGCC AGCCAGCGAA TTCTCAACGC TGCGATGATG CCGAATTATA CTGTATTATG AGACTCTTGA AAATGCAGCG AGTATTCGGA CAGGGTGGAC AATACTGACG CCTGGACCTA TGCACACTAC CTGTCCTCAA GTCCGAGCGG TGGTAGAATA CGGAGTGCCT AGAGCTTGGT GATTCATGGA AAATGTCTCC ATTTACAACG TTTTGTTTCG CTTCCCGTCA CTTTACAAAT GCGAGAGGAA CTAAAGAGAC CTGATTATTT CTCAGACTCT GCTACAATTC TCGTGTTTTT CTCTTGCAAT AATGTAAGTT TCCGATCATG AATCAGATGT TTCGAATCAC ATCAGATTTT TTTAATTGCC AA |
CDS |
| >Mp5g16850.1 ATGAGAGCCT CAGTACAGAG CAGAGTGTTC CAGATGATGT CTCAGATTTT AGGGTACCCC AGTCGTATCG GACCAGGCAA CGGATGTGCC CCACAGATGG GAAGAGCTTT CAGTGCTTCT TCGAGTTTAG GAGAAAGAAA GCAGGATATC TTCTCTAGCT TAGGATTGGG AACTTATGAT GGTGCATCGG GTATGATGTT GAGGCAAGAA TGCGAGAAGT CCGAGATTGC TGGAAGATTT ATGGATCGCC ACTCACCTGC TGTACTGCTG TTGAAAAACC AGTGCGGAGT CGGACGATCG AAGCGAATGG AGATAAGCAC AAACAATCAG CAGCAGGAGG AGTCACTGCC CACTGTTTAT GCTCATAATC GACTGATAAG TGTCTTGATG GAGGGAGGGT ATCATGAGGA GGCGTACCAC ATATATCAAG ATATGCTGCT GGAAACTTGC AAGCCTGACT CCCATACATA CGTTCGGTTA ATCATGGGAT TTTGTAGGGC CGGGAGGATC GAAGAAGCAT ATGGGATTTT TCAGGATATG AAAAACCAGA ACTGTGAATC TAAAGGTATT GTGTACAATG CCATGATACA TGCGGTTGGG ACAGCGGGTC TTGTATCCGA AGCTTTAAAG CTGTTGGATG AAATGACAGA AGCAGATTGC TCTCCGGACA CATGGACGTA CAATAGTGTC ATACATAGCC TAGGCAAAGT AGGTGATGTG AATCACGCTC TACGTCTCCT GGAGACCATG CACGTCAATG GCTGCAATCC GGACGTAATT ACCTACAACT CGCTGATTTC CTCATTAGGC AAGTGCGGAC GAGTTGTGGA AGCATGCAAG TTGTATGAAG GGATGGTTGA AAAAGGTTGT CTACCTGACG TTGTTACTTA TAACACCCTT ATTCCAGTAC TTTGCAAGGC TGGTGAATTT TCTGCCGCTC TTAATTTGTT TAAGTTTATG CAATCTGTGG GATGTCGGCC CGATGTCTTT ACATACAGTT CTTTGGTAGT AGGTCTGTGC AGAGCAGACA GAGTAGACGA TGCCTTGCGT CTATCAAGTC AGATGACTCT CAGTGGATGC TCTCCGAACA CAGTTACATT CAACTCTTGG TTGGATGGAC TTTGCAAGGA GGGCCGAGTA AGAGAGGCGC AGGTGCTTTA CCAGAAAATG TTGACACTAG GATATATTCC TGATGTTATT ACGTTCTCCA TACTCATAGA TGCCTTTTGC AAGAGTGGTG AATATCTGGA AGAGGCCTTT AAGCTGCTGA AACTCATCGT GAAAAAACCG GACACCGTGG ATGTCCGTAC ACGTGACATT ATTCATAATA GTTTCATGAG AGTGGGCATG ATGAAACAAG CAAAGCGGAT CATGAGGAAC GCCCGGCACA AGCGGGTCAG GTTGCAAAAT CAAGCTGGAG ATGTAAAACA CATGTAG |
Protein |
| >Mp5g16850.1 MRASVQSRVF QMMSQILGYP SRIGPGNGCA PQMGRAFSAS SSLGERKQDI FSSLGLGTYD GASGMMLRQE CEKSEIAGRF MDRHSPAVLL LKNQCGVGRS KRMEISTNNQ QQEESLPTVY AHNRLISVLM EGGYHEEAYH IYQDMLLETC KPDSHTYVRL IMGFCRAGRI EEAYGIFQDM KNQNCESKGI VYNAMIHAVG TAGLVSEALK LLDEMTEADC SPDTWTYNSV IHSLGKVGDV NHALRLLETM HVNGCNPDVI TYNSLISSLG KCGRVVEACK LYEGMVEKGC LPDVVTYNTL IPVLCKAGEF SAALNLFKFM QSVGCRPDVF TYSSLVVGLC RADRVDDALR LSSQMTLSGC SPNTVTFNSW LDGLCKEGRV REAQVLYQKM LTLGYIPDVI TFSILIDAFC KSGEYLEEAF KLLKLIVKKP DTVDVRTRDI IHNSFMRVGM MKQAKRIMRN ARHKRVRLQN QAGDVKHM |