Mp5g16920
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF03018 | Dirigent-like protein |
| PANTHER | PTHR21495 | NUCLEOPORIN-RELATED |
| MapolyID | Mapoly0117s0014 | - |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpDIR33 | Secondary metabolism enzyme | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
Dirigent-like defense marker; expression was significantly higher in infected plants than controls by qRT-PCR, consistent with prior reports of up-regulation in pathogen-treated moss.
1 core 5 peripheral
Carella, P., et al. (2018)
· Proceedings of the National Academy of Sciences USA: doi/10.1073/pnas.1717900115 research experimental subject
Dirigent-like defense marker; expression was significantly higher in infected plants than controls by qRT-PCR, consistent with prior reports of up-regulation in pathogen-treated moss.
Chini, A., et al. (2021)
· Plant Physiology research experimental comparator
Dirigent-like OPDA-responsive marker gene; induced by 10 uM OPDA in Tak-1 plants, induction suppressed by J4 pretreatment.
Liang, W., et al. (2024)
· Plant Physiology research experimental tool
dn-OPDA-specific marker gene whose expression was measured; significantly higher in Mpgh3age plants than WT upon wounding.
Kaji, T., et al. (2024)
· iScience research experimental tool
Dirigent-like jasmonate-signaling marker gene measured by RT-qPCR to read out hormone-induced responses.
Carella, P., et al. (2024)
· Current Biology research experimental background
Dirigent protein; defense-associated DEG.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g16920 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g16920.1 GGCCTAGGGA ATCTCATATG CCTCCTCTGA GATTCGCACA GAGTGTCGAT GGACTGCAGA GGATTTTCTC TACGAGTCTC GGACAGCTTC GACTCCTGAA GGTCACTGCC GATTTGGGAG ATGTCTCATC TCAACAAAAC TATAAAGACC TTCCCAGCAG CGGTTATCTA ACAGCAGTCT TGAGTTCTCA GCATCTCATG TGCTCCGCTC CAAGCCATCC GTCCTCTGCT TCAGGCATCA AGGCGAATTT TAGAATCCAA GAACGACTGC ACGTCGCACA AAGCAAACTT TAAGGCTTCC TCAACTGCTT GCAGGGAGAC ATACGCGCAC CAAGTAGCTA ATATTGCTCC ACGCCTCGTC GCATTTCACT GTAATTTAGA CTTCGGTTTC CAGCTGAAGA TGACAACGAT GTCGACGAGA CTCCAGGCTT GCACTTGTTT GTTGTTGGTA GCCATCGCCA TCTCCTTCAG TGGAGGTGTT GTGGAAGCAA GGAGGCATAG CGAACATAAG AAGCTCGAGT TCTACTTGCA TGAGCAATTT GTGAGTGAGC CGGGATACCC GGCCACTGAT CTGCTAGCGG CATCGGCCAC GGGCAATACG TCTACGTACG CTTTCGGAAA TCTCGGAATA TCAGAGCAGG TCATCAGGGA AGGGGTAAGC AACACTTCGA CCATCATCGG CCGAGCCCCA GGAACTTTCC AGCCCAACAT GGAGGAGAGA ACCTTCGCTC TGTACAAATT GTTGACCCTC CAGACACAAA AATGGAACGG CACCCTCGTC GTCTTCTGCG ACTGGCTTTC GGATGCAGAT TCTAACGAAT GGACCGTCGT GGGAGGAACT GGAACATTCA GAATGAAGAG AGGGTACGCG ATCAACACCA AAGCAGCTGG AGGCGCAGGC ACCAATTCCA TCACATTCAA GTGGGAAATT TACCTCCATT GACTACCACG TTGATTTCAG CAACATTGCG CTGCAGCTCC GCCTGTGTGG CAATTGTTTC ACTGCCACAC AGTGGAACAA TTGTTATTTG AATACAGGAG GGCTCTTCGG AACTTAGAAT AGTACTTGTA GGTGAGTTAC TTATCAGTAA GACATTGGTA AGCTTCAATT AAGTAGTATA CCTGGATTTC GCATACTTCA ATCTCGAGGA CTTGCAAATG AATTCTGAAT TTGAACATGC GATTGTTGCA CCGTAGAAGC ATTGTGATGG GTGCAGTGAG CGCTGTGTCT AGTTGAGTCA TATCTCCCCG TGCGACATGA TGTAGAGCTG CAGATAGCAC TGCTGCAGTG CTATCTGCAG CAGTATTACT CTTATAATAC TCTGCAGTGC CACTGCAGAG TATTTGCGGG ATGCCATGAG AAGTGAGACT GAGAGGCTCG AAATTATGCC ACAATGCAGA ACACAAAAGA TGTAGCGTCC ATCACTTTCT CAATTATGAA TGGAGGATTA ATACGTCTCT TTAACTCCTT CAAGCTCTGT TCGTTCGAAG CAGACGAGTA ATAAAAGCTT TTTGGTCAAC AGGTCAACAA C |
mRNA UTR + CDS |
| >Mp5g16920.1 GGCCTAGGGA ATCTCATATG CCTCCTCTGA GATTCGCACA GAGTGTCGAT GGACTGCAGA GGATTTTCTC TACGAGTCTC GGACAGCTTC GACTCCTGAA GGTCACTGCC GATTTGGGAG ATGTCTCATC TCAACAAAAC TATAAAGACC TTCCCAGCAG CGGTTATCTA ACAGCAGTCT TGAGTTCTCA GCATCTCATG TGCTCCGCTC CAAGCCATCC GTCCTCTGCT TCAGGCATCA AGGCGAATTT TAGAATCCAA GAACGACTGC ACGTCGCACA AAGCAAACTT TAAGGCTTCC TCAACTGCTT GCAGGGAGAC ATACGCGCAC CAAGTAGCTA ATATTGCTCC ACGCCTCGTC GCATTTCACT GTAATTTAGA CTTCGGTTTC CAGCTGAAGA TGACAACGAT GTCGACGAGA CTCCAGGCTT GCACTTGTTT GTTGTTGGTA GCCATCGCCA TCTCCTTCAG TGGAGGTGTT GTGGAAGCAA GGAGGCATAG CGAACATAAG AAGCTCGAGT TCTACTTGCA TGAGCAATTT GTGAGTGAGC CGGGATACCC GGCCACTGAT CTGCTAGCGG CATCGGCCAC GGGCAATACG TCTACGTACG CTTTCGGAAA TCTCGGAATA TCAGAGCAGG TCATCAGGGA AGGGGTAAGC AACACTTCGA CCATCATCGG CCGAGCCCCA GGAACTTTCC AGCCCAACAT GGAGGAGAGA ACCTTCGCTC TGTACAAATT GTTGACCCTC CAGACACAAA AATGGAACGG CACCCTCGTC GTCTTCTGCG ACTGGCTTTC GGATGCAGAT TCTAACGAAT GGACCGTCGT GGGAGGAACT GGAACATTCA GAATGAAGAG AGGGTACGCG ATCAACACCA AAGCAGCTGG AGGCGCAGGC ACCAATTCCA TCACATTCAA GTGGGAAATT TACCTCCATT GACTACCACG TTGATTTCAG CAACATTGCG CTGCAGCTCC GCCTGTGTGG CAATTGTTTC ACTGCCACAC AGTGGAACAA TTGTTATTTG AATACAGGAG GGCTCTTCGG AACTTAGAAT AGTACTTGTA GGTGAGTTAC TTATCAGTAA GACATTGGTA AGCTTCAATT AAGTAGTATA CCTGGATTTC GCATACTTCA ATCTCGAGGA CTTGCAAATG AATTCTGAAT TTGAACATGC GATTGTTGCA CCGTAGAAGC ATTGTGATGG GTGCAGTGAG CGCTGTGTCT AGTTGAGTCA TATCTCCCCG TGCGACATGA TGTAGAGCTG CAGATAGCAC TGCTGCAGTG CTATCTGCAG CAGTATTACT CTTATAATAC TCTGCAGTGC CACTGCAGAG TATTTGCGGG ATGCCATGAG AAGTGAGACT GAGAGGCTCG AAATTATGCC ACAATGCAGA ACACAAAAGA TGTAGCGTCC ATCACTTTCT CAATTATGAA TGGAGGATTA ATACGTCTCT TTAACTCCTT CAAGCTCTGT TCGTTCGAAG CAGACGAGTA ATAAAAGCTT TTTGGTCAAC AGGTCAACAA C |
CDS |
| >Mp5g16920.1 ATGTCGACGA GACTCCAGGC TTGCACTTGT TTGTTGTTGG TAGCCATCGC CATCTCCTTC AGTGGAGGTG TTGTGGAAGC AAGGAGGCAT AGCGAACATA AGAAGCTCGA GTTCTACTTG CATGAGCAAT TTGTGAGTGA GCCGGGATAC CCGGCCACTG ATCTGCTAGC GGCATCGGCC ACGGGCAATA CGTCTACGTA CGCTTTCGGA AATCTCGGAA TATCAGAGCA GGTCATCAGG GAAGGGGTAA GCAACACTTC GACCATCATC GGCCGAGCCC CAGGAACTTT CCAGCCCAAC ATGGAGGAGA GAACCTTCGC TCTGTACAAA TTGTTGACCC TCCAGACACA AAAATGGAAC GGCACCCTCG TCGTCTTCTG CGACTGGCTT TCGGATGCAG ATTCTAACGA ATGGACCGTC GTGGGAGGAA CTGGAACATT CAGAATGAAG AGAGGGTACG CGATCAACAC CAAAGCAGCT GGAGGCGCAG GCACCAATTC CATCACATTC AAGTGGGAAA TTTACCTCCA TTGA |
Protein |
| >Mp5g16920.1 MSTRLQACTC LLLVAIAISF SGGVVEARRH SEHKKLEFYL HEQFVSEPGY PATDLLAASA TGNTSTYAFG NLGISEQVIR EGVSNTSTII GRAPGTFQPN MEERTFALYK LLTLQTQKWN GTLVVFCDWL SDADSNEWTV VGGTGTFRMK RGYAINTKAA GGAGTNSITF KWEIYLH |