Mp5g18090



Description

Annotation

Database ID Description
Pfam PF00583 Acetyltransferase (GNAT) family
Gene3D G3DSA:3.40.630.30 -
PANTHER PTHR47370 ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN
ProSiteProfiles PS51186 Gcn5-related N-acetyltransferase (GNAT) domain profile.
SUPERFAMILY SSF55729 Acyl-CoA N-acyltransferases (Nat)
CDD cd04301 NAT_SF
KOG KOG3139 N-acetyltransferase; [R]
MapolyID Mapoly0084s0056 -
GO GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

HOOKLESS1-like (Mp5g18090); ethylene-responsive DEG.

0 core 1 peripheral

Katayose, A., et al. (2021) · Plant and Cell Physiology  research experimental background
HOOKLESS1-like (Mp5g18090); ethylene-responsive DEG.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g18090.1 chr5:22371480..22374717 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g18090 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g18090 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.