Mp5g18370



Description

Annotation

Database ID Description
CDD cd15489 PHD_SF
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:1.10.246.220 -
Coils Coil Coil
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
CDD cd11660 SANT_TRF
Pfam PF00628 PHD-finger
ProSitePatterns PS01359 Zinc finger PHD-type signature.
PANTHER PTHR47863 RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN
ProSiteProfiles PS50090 Myb-like domain profile.
SMART SM00249 PHD_3
SUPERFAMILY SSF46689 Homeodomain-like
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
KOG KOG0955 PHD finger protein BR140/LIN-49; C-term missing; [R]
MapolyID Mapoly0084s0085 -

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB16 transcription factor, MYB Published

Transcript models

Transcript ID Location Sequences Extract region
Mp5g18370.1 chr5:22629051..22634850 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g18370 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g18370 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.