Mp5g19510



Description

Annotation

Database ID Description
CDD cd21037 MLKL_NTD
Coils Coil Coil
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:1.20.930.20 -
Pfam PF04749 PLAC8 family
Pfam PF19584 MCAfunc domain
PANTHER PTHR46604 PROTEIN MID1-COMPLEMENTING ACTIVITY 1
NCBIfam TIGR01571 uncharacterized Cys-rich domain
MapolyID Mapoly0134s0009 -
GO GO:0007166 cell surface receptor signaling pathway

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Single MCA ortholog (Mp5g19510) characterized as the main subject; MpMCA-promoter GUS/Citrine reporters, CRISPR Mpmca knockouts, YC3.60 Ca2+ imaging, and Arabidopsis MCA1 complementation were used. It is a plasma-membrane protein expressed in the notch/dividing cells and reproductive organs; mutants show severe cell proliferation/differentiation defects and reduced cytoplasmic Ca2+, so MpMCA regulates Ca2+-dependent cell proliferation and sexual reproduction.

1 core 0 peripheral

Iwano, M., et al. (2024) · Plant Physiology  research experimental subject
Single MCA ortholog (Mp5g19510) characterized as the main subject; MpMCA-promoter GUS/Citrine reporters, CRISPR Mpmca knockouts, YC3.60 Ca2+ imaging, and Arabidopsis MCA1 complementation were used. It is a plasma-membrane protein expressed in the notch/dividing cells and reproductive organs; mutants show severe cell proliferation/differentiation defects and reduced cytoplasmic Ca2+, so MpMCA regulates Ca2+-dependent cell proliferation and sexual reproduction.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g19510.1 chr5:23912599..23919564 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g19510.2 chr5:23915161..23919564 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g19510 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g19510 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.