Mp5g21680



Description

Annotation

Database ID Description
PANTHER PTHR11771 LIPOXYGENASE
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF49723 Lipase/lipooxygenase domain (PLAT/LH2 domain)
Pfam PF01477 PLAT/LH2 domain
Gene3D G3DSA:4.10.375.10 -
Pfam PF00305 Lipoxygenase
SUPERFAMILY SSF48484 Lipoxigenase
ProSiteProfiles PS50095 PLAT domain profile.
ProSitePatterns PS00711 Lipoxygenases iron-binding region signature 1.
Gene3D G3DSA:4.10.372.10 -
Gene3D G3DSA:1.20.245.10 -
PRINTS PR00468 Plant lipoxygenase signature
PRINTS PR00087 Lipoxygenase signature
SMART SM00308 LH2_4
ProSiteProfiles PS51393 Lipoxygenase iron-binding catalytic domain profile.
Gene3D G3DSA:2.60.60.20 PLAT/LH2 domain
Gene3D G3DSA:3.10.450.60 -
MapolyID Mapoly0106s0031 -
GO GO:0046872 metal ion binding
GO GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO GO:0005515 protein binding
GO GO:0034440 lipid oxidation
GO GO:0016491 oxidoreductase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpLOX4 Lipoxygenase Published

Associated Literature (AI-based literature mining, Beta-version)

Lipoxygenase, wound-inducible in an MpERF15-dependent manner; repressed in MpERF15OE lines and likely active in the OPDA biosynthetic pathway.

1 core 1 peripheral

Liang, Y., et al. (2022) · Science Advances  research experimental subject
Lipoxygenase, wound-inducible in an MpERF15-dependent manner; repressed in MpERF15OE lines and likely active in the OPDA biosynthetic pathway.
Kneeshaw, S., et al. (2022) · PNAS  research experimental tool
Wound-responsive lipoxygenase gene (Mp5g21680) used as a marker in qPCR expression analyses.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g21680.1 chr5:27686212..27691739 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g21680 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g21680 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.