Mp5g22160



Description

Annotation

Database ID Description
FunFam G3DSA:3.30.730.10:FF:000001 Ethylene-responsive transcription factor 2
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51032 AP2/ERF domain profile.
PANTHER PTHR31657 ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061
Pfam PF00847 AP2 domain
SMART SM00380 rav1_2
PRINTS PR00367 Ethylene responsive element binding protein signature
SUPERFAMILY SSF54171 DNA-binding domain
Coils Coil Coil
CDD cd00018 AP2
Gene3D G3DSA:3.30.730.10 AP2/ERF domain
KEGG K09286 EREBP-like factor
MapolyID Mapoly0166s0010 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpERF21 transcription factor, AP2/ERF Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, AP2/ERF (from nomenclature)

0 core 3 peripheral

Takaoka, Y., et al. (2024) · PNAS Nexus  research experimental tool
MpEIN3-mediated marker gene; expression was activated by peptide 4 with OPDA relative to OPDA alone, used as a readout of EIN3-branch activity.
Ishida, S., et al. (2022) · Plant & Cell Physiology  research experimental background
Class-X ERF (Mp5g22160); regeneration-associated DEG.
Katayose, A., et al. (2021) · Plant and Cell Physiology  research experimental background
MpERF21 ethylene-induced, suppressed by STS

Transcript models

Transcript ID Location Sequences Extract region
Mp5g22160.1 chr5:28404228..28407384 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g22160.2 chr5:28404228..28407384 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g22160 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g22160 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.