Mp5g24070



Description

Annotation

Database ID Description
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
Gene3D G3DSA:3.90.25.10 -
CDD cd05255 SQD1_like_SDR_e
Gene3D G3DSA:3.40.50.720 -
PANTHER PTHR43000 DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED
Pfam PF01370 NAD dependent epimerase/dehydratase family
KEGG K06118 UDP-sulfoquinovose synthase [EC:3.13.1.1]
KOG KOG1371 UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase; [M]
MapolyID Mapoly0010s0049 -
GO GO:0009247 glycolipid biosynthetic process
GO GO:0046506 sulfolipid biosynthetic process
GO GO:0046507 UDPsulfoquinovose synthase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSQD lipid turnover protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

lipid turnover protein (from nomenclature)

0 core 2 peripheral

Rico-Reséndiz, F., et al. (2020) · International Journal of Molecular Sciences  research sequence comparator
Sulfolipid (SQDG) biosynthesis enzyme; single homolog identified phylogenetically with conserved distribution across plant lineages.
Shimojo, M., et al. (2023) · Planta  research experimental background
SQDG synthase; qPCR showed induced expression under Pi and N starvation, correlating with SQDG accumulation.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g24070.1 chr5:30572838..30575585 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g24070.2 chr5:30572890..30575275 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g24070 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g24070 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.