Mp6g01260



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:3.30.40.10:FF:000055 Ubiquitin conjugation factor e4 a
Pfam PF04564 U-box domain
Coils Coil Coil
SMART SM00504 Ubox_2
PANTHER PTHR13931 UBIQUITINATION FACTOR E4
ProSiteProfiles PS51698 U-box domain profile.
Pfam PF10408 Ubiquitin elongating factor core
SUPERFAMILY SSF57850 RING/U-box
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
CDD cd16657 RING-Ubox_UBE4A
KEGG K10597 ubiquitin conjugation factor E4 B [EC:2.3.2.27]
KOG KOG2042 Ubiquitin fusion degradation protein-2; [O]
MapolyID Mapoly0052s0078 -
GO GO:0005634 nucleus
GO GO:0000151 ubiquitin ligase complex
GO GO:0016567 protein ubiquitination
GO GO:0006511 ubiquitin-dependent protein catabolic process
GO GO:0004842 ubiquitin-protein transferase activity
GO GO:0000209 protein polyubiquitination
GO GO:0030433 obsolete ubiquitin-dependent ERAD pathway
GO GO:0005737 cytoplasm
GO GO:0034450 ubiquitin-ubiquitin ligase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpU-box Housekeeping Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp6g01260.1 chr6:1995163..2003645 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g01260 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g01260 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.