Mp6g03240
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF13812 | Pentatricopeptide repeat domain |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. |
| SUPERFAMILY | SSF160443 | SMR domain-like |
| Pfam | PF01535 | PPR repeat |
| NCBIfam | TIGR00756 | pentatricopeptide repeat |
| Gene3D | G3DSA:3.30.1370.110 | - |
| PANTHER | PTHR47447 | OS03G0856100 PROTEIN |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain |
| ProSiteProfiles | PS50828 | Smr domain profile. |
| SMART | SM00463 | SMR_2 |
| MapolyID | Mapoly0035s0104 | - |
| GO | GO:0005515 | protein binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpPPR_66 | Pentatricopeptide repeat proteins | Published |
Associated Literature (AI-based literature mining, Beta-version)
Pentatricopeptide repeat proteins; Genome paper MpPPR_66: Mapoly0035s0104.1 (from nomenclature)
0 core 1 peripheral
Lin, P. C., et al. (2016)
· Plant and Cell Physiology research experimental comparator
Pentatricopeptide-repeat gene (LW9825) that generates Mpo-miR11692.1 to autoregulate its own mRNA; dual precursor/target.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp6g03240 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp6g03240.1 GAAGCCCGCG ACGCGTGCTT CCCCGAGCTC GGCCTCAGCC AGGCCTCCGG CTTGTCGGGA GCCATTCGCC CGTCGCCAGT CGTTCCTTCT TGCTCGTTGT ATGGCTTCCA TGTCGTGAAT TCGCGTGTCC CGGGCGTCGA ATTGGAGCCT CGCAGGGTGT CAGCGGCATT GCAGTCCTTT GCCTTCGGGC CCAGACGAGC GAGACGGAAG GGCTGCCCTT AAATAGCGGA TCTTCGTCGG CAATTCTCGT ACTCTCGCGA GCTCTGTCAT GATCCCACGA TTCTGCTTGA GTGCGGAGCA CCGGGCTCAT TCCAAGAAGC CTGTAGCGGT GGGAATCAAT TGAATTGGAA TCCAGACTCC GTAGTTGGGT TCAATAGCAG AGCTCGTCAG GGGCGCATAC TGGGAAGGTC TCGGGTGAGG GTGAGTGGTG GGGGAGATTA AGGATAAGCT TGTTCGCGGA GGCGGAGGAG AGGAGGAAGG GGAGTAGATT GAAGATGAGT ATAGTGATGG CAAATTGGTT TGCTCCTCCT AGTGCCGGCT TGAGTCTGGG GACTTACTTG CCTTCTGTGA TGCCTATCGA GTGCGGAGGG AGCAGAAAGG TTGCAGAGCG CGTAATGACG AAGCTCCAGA GAACTCGCGA GGACCCGCGT GCTGTTGGAG GGGCTCTGAG AAGACTGAAC AACCATTCGA AGATGATGCA GATTCAAATC TTAGAGCATC TTGTCGATGA GCAGGACTGG CAGCTGGCCC TCCCGGTATT TCGCTTGCAC TTATCCCCGT TTGTCAAAAT CGAATTTGAG TCCCACTTCT TGACTTGCTC TTGTTTGGAT CAGCATCTTT TTGTACTCCC TCCAGTCCCA TTGAAAAACA TTGCGCGTTC ATGAGAGAGG GAGGGGCAAA TCCTGCACAC CAATCTTCAT TCAGTGCCCG CTGATCAACG TAGACGTAAA GGGAATTCTT TTCCTGAAGT CGCATCCTCC ATTTGTGCAA CACTCATACT TTTGCACTTA CCAACCTGAT GTTTACTTGC TTGGCCCATT TTTACCGAGA GGCCTGGAAA AAAGACTTCG TGCATATATG GAGTCTTCAA AAGCCCGTGC TTGAAGTTAA AGCTCGTACA GTAAGAATAT CTGCTGAGTA ATCTGCCTCA TTTTGGTCGA GTTGCCTGTG TTGCTCCTGG ATTTGAAGCT CAGTCCAATG TTATATGACT TCTCGCGTCG TATTCGGAAG CTTCCGTTGT ACTCGAACTG AGAGTAGCCC TGCGGTAAAT GGTTTGTTCA TAGGCAACGT TTGAAGACGG AAAAAAAAGC AACGAACTGA AACGAACTTT TTGTTGAGTC CCTTCATCAC ATCCCCACAC CCCTCATCTA TCGCCTCGTG AATCTTTGTT CAGAGACCAC TATGACCTTC CTTGAGTCGT TCAATCCGGT TGTAAATTCA GTGTGGGTCA GTGGACTGTT TGTGGATCAG ACGGAAGTTT GTCTTTCCTC TAAATTGTTT CCGAAGAGTG GCCAGGACCT GACGTACCCA AAAGAATATA CATGTCATTT TTCGGTCTTC TCATAAACGC CCGCCAGAGT TTTCTATTGT TGGGAGCACA CACCATTACC TTCGTTGAGT AGCTTGAGAT TCCCCTTGGT AGCCACTGAT GCAACTAGAG GAGGCGGAAC GGAACGAACT TTCAAAAGTT TGCGGATCGG TGGTAAGAAT GTGGTTTCAT ATATTAGGAA AGCAACAAGG ACCCTTGTCT TCCGTGTTCC TTGGTCCGTT GTAACAACTG CCGCATCTTG GTGTGGATTT CAAGTTCTGC TCATCTCACC TCCCCCTGTC TAATTCGGTG TGGTCTTGGT GTTTCGACAC GATCTTCAGA TGTACAAGTC CTTGAGGGAA AAGGAGTGGT TCCAGTGGAA TCCGAGTCTG CATGCGAAGA TGGTAGCCTT GCTTGCAACA GCGCAACAAT CTCAAGAAAT GGAGAGTCTG ATACTGGAAA CACCAGAAAA CTTGACAGTC AGGGACAGAT TGAACTTGCA GGTATCTCTA ATAGAAAACT TTGGGAAGCG TGGTCTCCTC GACCATGCCC TGGTCATCTT TCAAGAACTT CAGTTTCTTC CATTCCCAAG TGCCGGACAC TCGAGTTATC GAGCATTGGT TCGGGCTTAC GTACACGCAG GATTACCTCA TGAAGCCCAC GTATTCCTGT CGGAGATGAA AAGGGAGGGG TTCAAAGCGT CGTTGGATGA TTACAAGACG CTGCTGTATG CCTACGGAAG AGACGGATAT CTTGCAGAAA TGGAAAAGAT AGTGGAGGAG ATCAGCACTT CGGGCCTGAA AATGGATAAG ACAGGTTACA ACATGATGCT ATCTGCTTAC GGCCAAGCCA GGAAGTTCGA TTTAGTTCTC GAAACCCTCG AGAAAATGAG AAGAATGAAC ATCTCTTGCT CTGTCAACTC GCGAAATGCC ATCAGCAAGT CATGTCCCAG CATAAGCTCC CTCTTCGCCG AGCTGGAAGC TATGCCGGCC AACTCTGCAT CTTTGTGCAG TGAGCTGGAA CTTCGGGAGG TTTCCGGAGG AGAACTGGCG GTTATAAAAG AATTACTTAT CCTCGGAGTA CCTGCGGATT GCGTCAAATA CTCGGAGGAT GCCTGGGAGC TGGATTTGCA TCACATGTTC ATGGGAACTG CCAACATTGC TCTGTTTCTC TGGCTCCAGC AACTTAAAGC GAGGTGCATG GGAGGTGTGA AGTTCCCTGT GGAGGTGAGG GTCGTAACTG GATGGGGGAA GCACAGCGAC GTCGAAGGCA AATCTGTTGT CAAGCAAAAC GTCGCAGAAT TTTTAGAAAG GTTAAAGTCG CCATTCAGAG TTGACAGCCA GAACCGAGGA GTAATGACTG CCCGTGGAAG TTCCCTGCAA GCTTGGCTGA ATGCTCTCTT TCAGTCATGA TTTCGGCGAC ATATGGGCTC ACTGACTGAA GTCATTGCCA TCGCGGAATC TCGAATAGCC TTTATTAGAG ATACCTGCAA GTTCGGTCTG TCCCTTTCTG TTAAGTTTTC CGCTGCCTTC CAAGTCTTCT GCTGTCAAAA GCCGTCAGTG CTTGGCATTG CCGGTGGAAC ACTCTTTCTC AGCCGCGACG TTCAATTCCT CTGCAGCGTG TTTTGCACAC GAGCTGCCAC ACCTACCTCC ACAAACCAAA GCAAAGCCAT CATGTGTAGA ATAGTAAGGC CAAGTGTAAA TAGGTTCTCT CATCCAAAGT TTGTGCAGTA ATTCAAGTCA CGTGTAAATA CTTCATTCGA GTCTAGTTCG CAGGAAGCTA TGGTACCTTA CTGTAGGTTA GTGAAAGACC TTGATTTTAG ACTCCCATTG CTACCCTTCC CGGAGGCTTT CGTTTATATT TAAGAACAAA GCAGACCGAA GGTTCGGAGA TGTACATGTA CATCACCTGT ACGTACTTCT TCAGGAGGCA CCACCGTCTG CCTTGACTAG AACTCAGGTA GGGTCAGTGT TGCAAACTAT GTTTGCCACT CGTACTCGTT CCATCTTGCA AAGCTTTAGT ATCAGGCCTG CTTGGATGTT GATGTAGATC ATATTTTTCT TGCTGATTAG CAGGGCTTGT AAAATAGCGA CCAAAGCAAT TC |
mRNA UTR + CDS |
| >Mp6g03240.1 GAAGCCCGCG ACGCGTGCTT CCCCGAGCTC GGCCTCAGCC AGGCCTCCGG CTTGTCGGGA GCCATTCGCC CGTCGCCAGT CGTTCCTTCT TGCTCGTTGT ATGGCTTCCA TGTCGTGAAT TCGCGTGTCC CGGGCGTCGA ATTGGAGCCT CGCAGGGTGT CAGCGGCATT GCAGTCCTTT GCCTTCGGGC CCAGACGAGC GAGACGGAAG GGCTGCCCTT AAATAGCGGA TCTTCGTCGG CAATTCTCGT ACTCTCGCGA GCTCTGTCAT GATCCCACGA TTCTGCTTGA GTGCGGAGCA CCGGGCTCAT TCCAAGAAGC CTGTAGCGGT GGGAATCAAT TGAATTGGAA TCCAGACTCC GTAGTTGGGT TCAATAGCAG AGCTCGTCAG GGGCGCATAC TGGGAAGGTC TCGGGTGAGG GTGAGTGGTG GGGGAGATTA AGGATAAGCT TGTTCGCGGA GGCGGAGGAG AGGAGGAAGG GGAGTAGATT GAAGATGAGT ATAGTGATGG CAAATTGGTT TGCTCCTCCT AGTGCCGGCT TGAGTCTGGG GACTTACTTG CCTTCTGTGA TGCCTATCGA GTGCGGAGGG AGCAGAAAGG TTGCAGAGCG CGTAATGACG AAGCTCCAGA GAACTCGCGA GGACCCGCGT GCTGTTGGAG GGGCTCTGAG AAGACTGAAC AACCATTCGA AGATGATGCA GATTCAAATC TTAGAGCATC TTGTCGATGA GCAGGACTGG CAGCTGGCCC TCCCGATGTA CAAGTCCTTG AGGGAAAAGG AGTGGTTCCA GTGGAATCCG AGTCTGCATG CGAAGATGGT AGCCTTGCTT GCAACAGCGC AACAATCTCA AGAAATGGAG AGTCTGATAC TGGAAACACC AGAAAACTTG ACAGTCAGGG ACAGATTGAA CTTGCAGGTA TCTCTAATAG AAAACTTTGG GAAGCGTGGT CTCCTCGACC ATGCCCTGGT CATCTTTCAA GAACTTCAGT TTCTTCCATT CCCAAGTGCC GGACACTCGA GTTATCGAGC ATTGGTTCGG GCTTACGTAC ACGCAGGATT ACCTCATGAA GCCCACGTAT TCCTGTCGGA GATGAAAAGG GAGGGGTTCA AAGCGTCGTT GGATGATTAC AAGACGCTGC TGTATGCCTA CGGAAGAGAC GGATATCTTG CAGAAATGGA AAAGATAGTG GAGGAGATCA GCACTTCGGG CCTGAAAATG GATAAGACAG GTTACAACAT GATGCTATCT GCTTACGGCC AAGCCAGGAA GTTCGATTTA GTTCTCGAAA CCCTCGAGAA AATGAGAAGA ATGAACATCT CTTGCTCTGT CAACTCGCGA AATGCCATCA GCAAGTCATG TCCCAGCATA AGCTCCCTCT TCGCCGAGCT GGAAGCTATG CCGGCCAACT CTGCATCTTT GTGCAGTGAG CTGGAACTTC GGGAGGTTTC CGGAGGAGAA CTGGCGGTTA TAAAAGAATT ACTTATCCTC GGAGTACCTG CGGATTGCGT CAAATACTCG GAGGATGCCT GGGAGCTGGA TTTGCATCAC ATGTTCATGG GAACTGCCAA CATTGCTCTG TTTCTCTGGC TCCAGCAACT TAAAGCGAGG TGCATGGGAG GTGTGAAGTT CCCTGTGGAG GTGAGGGTCG TAACTGGATG GGGGAAGCAC AGCGACGTCG AAGGCAAATC TGTTGTCAAG CAAAACGTCG CAGAATTTTT AGAAAGGTTA AAGTCGCCAT TCAGAGTTGA CAGCCAGAAC CGAGGAGTAA TGACTGCCCG TGGAAGTTCC CTGCAAGCTT GGCTGAATGC TCTCTTTCAG TCATGATTTC GGCGACATAT GGGCTCACTG ACTGAAGTCA TTGCCATCGC GGAATCTCGA ATAGCCTTTA TTAGAGATAC CTGCAAGTTC GGTCTGTCCC TTTCTGTTAA GTTTTCCGCT GCCTTCCAAG TCTTCTGCTG TCAAAAGCCG TCAGTGCTTG GCATTGCCGG TGGAACACTC TTTCTCAGCC GCGACGTTCA ATTCCTCTGC AGCGTGTTTT GCACACGAGC TGCCACACCT ACCTCCACAA ACCAAAGCAA AGCCATCATG TGTAGAATAG TAAGGCCAAG TGTAAATAGG TTCTCTCATC CAAAGTTTGT GCAGTAATTC AAGTCACGTG TAAATACTTC ATTCGAGTCT AGTTCGCAGG AAGCTATGGT ACCTTACTGT AGGTTAGTGA AAGACCTTGA TTTTAGACTC CCATTGCTAC CCTTCCCGGA GGCTTTCGTT TATATTTAAG AACAAAGCAG ACCGAAGGTT CGGAGATGTA CATGTACATC ACCTGTACGT ACTTCTTCAG GAGGCACCAC CGTCTGCCTT GACTAGAACT CAGGTAGGGT CAGTGTTGCA AACTATGTTT GCCACTCGTA CTCGTTCCAT CTTGCAAAGC TTTAGTATCA GGCCTGCTTG GATGTTGATG TAGATCATAT TTTTCTTGCT GATTAGCAGG GCTTGTAAAA TAGCGACCAA AGCAATTC |
CDS |
| >Mp6g03240.1 ATGAGTATAG TGATGGCAAA TTGGTTTGCT CCTCCTAGTG CCGGCTTGAG TCTGGGGACT TACTTGCCTT CTGTGATGCC TATCGAGTGC GGAGGGAGCA GAAAGGTTGC AGAGCGCGTA ATGACGAAGC TCCAGAGAAC TCGCGAGGAC CCGCGTGCTG TTGGAGGGGC TCTGAGAAGA CTGAACAACC ATTCGAAGAT GATGCAGATT CAAATCTTAG AGCATCTTGT CGATGAGCAG GACTGGCAGC TGGCCCTCCC GATGTACAAG TCCTTGAGGG AAAAGGAGTG GTTCCAGTGG AATCCGAGTC TGCATGCGAA GATGGTAGCC TTGCTTGCAA CAGCGCAACA ATCTCAAGAA ATGGAGAGTC TGATACTGGA AACACCAGAA AACTTGACAG TCAGGGACAG ATTGAACTTG CAGGTATCTC TAATAGAAAA CTTTGGGAAG CGTGGTCTCC TCGACCATGC CCTGGTCATC TTTCAAGAAC TTCAGTTTCT TCCATTCCCA AGTGCCGGAC ACTCGAGTTA TCGAGCATTG GTTCGGGCTT ACGTACACGC AGGATTACCT CATGAAGCCC ACGTATTCCT GTCGGAGATG AAAAGGGAGG GGTTCAAAGC GTCGTTGGAT GATTACAAGA CGCTGCTGTA TGCCTACGGA AGAGACGGAT ATCTTGCAGA AATGGAAAAG ATAGTGGAGG AGATCAGCAC TTCGGGCCTG AAAATGGATA AGACAGGTTA CAACATGATG CTATCTGCTT ACGGCCAAGC CAGGAAGTTC GATTTAGTTC TCGAAACCCT CGAGAAAATG AGAAGAATGA ACATCTCTTG CTCTGTCAAC TCGCGAAATG CCATCAGCAA GTCATGTCCC AGCATAAGCT CCCTCTTCGC CGAGCTGGAA GCTATGCCGG CCAACTCTGC ATCTTTGTGC AGTGAGCTGG AACTTCGGGA GGTTTCCGGA GGAGAACTGG CGGTTATAAA AGAATTACTT ATCCTCGGAG TACCTGCGGA TTGCGTCAAA TACTCGGAGG ATGCCTGGGA GCTGGATTTG CATCACATGT TCATGGGAAC TGCCAACATT GCTCTGTTTC TCTGGCTCCA GCAACTTAAA GCGAGGTGCA TGGGAGGTGT GAAGTTCCCT GTGGAGGTGA GGGTCGTAAC TGGATGGGGG AAGCACAGCG ACGTCGAAGG CAAATCTGTT GTCAAGCAAA ACGTCGCAGA ATTTTTAGAA AGGTTAAAGT CGCCATTCAG AGTTGACAGC CAGAACCGAG GAGTAATGAC TGCCCGTGGA AGTTCCCTGC AAGCTTGGCT GAATGCTCTC TTTCAGTCAT GA |
Protein |
| >Mp6g03240.1 MSIVMANWFA PPSAGLSLGT YLPSVMPIEC GGSRKVAERV MTKLQRTRED PRAVGGALRR LNNHSKMMQI QILEHLVDEQ DWQLALPMYK SLREKEWFQW NPSLHAKMVA LLATAQQSQE MESLILETPE NLTVRDRLNL QVSLIENFGK RGLLDHALVI FQELQFLPFP SAGHSSYRAL VRAYVHAGLP HEAHVFLSEM KREGFKASLD DYKTLLYAYG RDGYLAEMEK IVEEISTSGL KMDKTGYNMM LSAYGQARKF DLVLETLEKM RRMNISCSVN SRNAISKSCP SISSLFAELE AMPANSASLC SELELREVSG GELAVIKELL ILGVPADCVK YSEDAWELDL HHMFMGTANI ALFLWLQQLK ARCMGGVKFP VEVRVVTGWG KHSDVEGKSV VKQNVAEFLE RLKSPFRVDS QNRGVMTARG SSLQAWLNAL FQS |