Mp6g03600
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases |
| Pfam | PF01202 | Shikimate kinase |
| PRINTS | PR01100 | Shikimate kinase family signature |
| PANTHER | PTHR21087 | SHIKIMATE KINASE |
| CDD | cd00464 | SK |
| Gene3D | G3DSA:3.40.50.300 | - |
| MapolyID | Mapoly0035s0139 | - |
| GO | GO:0004765 | shikimate kinase activity |
| GO | GO:0009507 | chloroplast |
| GO | GO:0005829 | cytosol |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSK2 | Secondary metabolism enzyme | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
CRISPR/Cas9 disruption of MpSKL1 (Mp6g03600) caused pigment-defective phenotypes, reduced growth and pale tissue, with abnormal chloroplast/thylakoid morphology and reduced chlorophyll a/b. Heterologous AtcTP-delta80MpSKL1 also rescued chloroplast biogenesis in Arabidopsis skl1-8, supporting a conserved role in chloroplast biogenesis.
1 core 0 peripheral
Kanaris M, Lee J, Chang B, Christendat D. (2025)
· Molecular biology and evolution research experimental subject
CRISPR/Cas9 disruption of MpSKL1 (Mp6g03600) caused pigment-defective phenotypes, reduced growth and pale tissue, with abnormal chloroplast/thylakoid morphology and reduced chlorophyll a/b. Heterologous AtcTP-delta80MpSKL1 also rescued chloroplast biogenesis in Arabidopsis skl1-8, supporting a conserved role in chloroplast biogenesis.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp6g03600 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp6g03600.1 CTCAAGAGTT CAATGTACCT ACGAAGACGT AAATTCCGCG ATGCCTTGGA AACACCAGTT TCATCCTGGT GGTTCTTCTT CAGGGTGGCC GGTTCATAAG AGGGCTTCTA AATGTTATAT CCCATGCGTC TCCACCTCCG TCTACCAGAT GATGAACAAA TGGCATCATG AGGGGTTGAA GGCCACGTGT CGTTTTCGGC CGAAAAAGGT GTGTCCCAAT TTGTCCGAAG AAAGCAGACG CTGAAGAGAA GGCGATCAAT TCAATCCTCT CGGCCCCTTT CCGAGCTACG GCAGCGCTTG AATTCCGAGC TGCCGCTGCG GACGGCGAAA GATATGGTGG AGAGCAGCAA CGACAGATTC CGATAGAAAG AACGTCCTCA GTGCGGAATT GAGCAGCTGC AGAGAATGCC ATACCGTCGA TAGTGACAGA CGAGCTCCGG TGACACGCTC CGGATAGGAG TGGCGATTTC GTCCCGTGCT CCCATGGCCG TAATGGCTGG TCGGGTGGCG GAATTGCTGG TTGCGACCTC TGTTCCGAGA AGGCCGAGCT CGCACTCGAG CCAGCACGTG AGCGCAAGTG GGAGGGCCAG GGCCAAATGT GCAGCGAGCG CTGTGAGTTC GGGAGCTTGC TTACTCACAT CGTTCTGCCG TCCTCGGACG ACGGGCAGCA GTGCAGGTCG AGCGAGGGCG ATCTTCGCAG GGGCGGGAGG CACTCCGGCG AGGGACGAGG AGACATTGCT GAAGAAGAAG GCCGCGGATT TAGCGCCTCA TTTGTCAGGG AGCAGCATTT TCCTCGTGGG TATGTCGAGA ACGGACAAGT CCACCGTGGG CAAGCACCTC TCGCAGGCTC TCGGGTACTA CTTCTTCGAC AGCATGGAAT TGGTGGAGAC GGCTGCCGGA GACGCCGTGC GGGAGATGAT CGAGCAAGAG CTTCTGGATG CTGAGACGGA AGTTCTCATG CAGCTGTCTC CCATGGTTCG TCTGGTCGTT GCCACGGGAG AAGGTGCCGT AGTCAGTCCG CGGAACTGGA GCTATTTGAG GACTGGAGTC ACCGTCTGGA TCGATGTGCC CGCGGATCAT CTGATTCAAA CCATCGCAGA ATCCGAGCCG CCTCCGGAGC TGGTGGATGA TACGAGAAAA ATGCTGAGAG CGAGAGCAGA GTACTACGCT AATGCTGATG TCACTGTCTC CATCGAGGAG CTTGCAGCCA AGAAGAACAT CGATGATTTG GCGTCACTCA CTGCTCCCAT GGTCGCTCTT CACGTTCTCG AAGAGATCGA TAGAGTTCTA AAGAAAGCGT AGATTCTTAC ACAGGATACT GAACAACCAA GACATGGGGC ATGTCTGTCT TGTAGGGTAG AGTAGATGGT GAGGAAGAGG TCAGCAAATT GCTGAATTTA TACTTGGACC ACGTTGACGA TCGGACGAGG TGCGGCTCCT CTCATTGTAT GGCACATACC AATGCATGTG CAAGTGCTCG CAATGTTCGT TACATGATTG TAGAGTCCGC CTCTGCGTGT CGCAGAGTAG GAGCCCACTC GGATCATGGG TAGCCCTCTC CTTCATGTAA TTTACAGGCA CAACAGATTC GTATATGACT TGAAGCTCCT AAGAGACCTG GACTTTTTGT ATACTGTGGC CAGCTGTCAT CTTCCACCAT TGAACAGGCG GGGGCCTGAT ACTAATGTCT TATCTGAGGA CGTTGGAAAA GATTCAAGCT CGATTGCTGC ATCTCGGTAG AGGTCCGAAG AGCGCTATGT TCCAAAACAT ATATATGATT TAGACGTCTG TGGTTTAAGT TCCTAATCAC AAGCAACTTC CTCACTGAAG CAACTCTCTT TGCCCCAGTC ATGAGGACAG TACAACAGAA GTGCTCGATC TGTAGATGTG CAATTGAGGA ATTTTGGTAT TT |
mRNA UTR + CDS |
| >Mp6g03600.1 CTCAAGAGTT CAATGTACCT ACGAAGACGT AAATTCCGCG ATGCCTTGGA AACACCAGTT TCATCCTGGT GGTTCTTCTT CAGGGTGGCC GGTTCATAAG AGGGCTTCTA AATGTTATAT CCCATGCGTC TCCACCTCCG TCTACCAGAT GATGAACAAA TGGCATCATG AGGGGTTGAA GGCCACGTGT CGTTTTCGGC CGAAAAAGGT GTGTCCCAAT TTGTCCGAAG AAAGCAGACG CTGAAGAGAA GGCGATCAAT TCAATCCTCT CGGCCCCTTT CCGAGCTACG GCAGCGCTTG AATTCCGAGC TGCCGCTGCG GACGGCGAAA GATATGGTGG AGAGCAGCAA CGACAGATTC CGATAGAAAG AACGTCCTCA GTGCGGAATT GAGCAGCTGC AGAGAATGCC ATACCGTCGA TAGTGACAGA CGAGCTCCGG TGACACGCTC CGGATAGGAG TGGCGATTTC GTCCCGTGCT CCCATGGCCG TAATGGCTGG TCGGGTGGCG GAATTGCTGG TTGCGACCTC TGTTCCGAGA AGGCCGAGCT CGCACTCGAG CCAGCACGTG AGCGCAAGTG GGAGGGCCAG GGCCAAATGT GCAGCGAGCG CTGTGAGTTC GGGAGCTTGC TTACTCACAT CGTTCTGCCG TCCTCGGACG ACGGGCAGCA GTGCAGGTCG AGCGAGGGCG ATCTTCGCAG GGGCGGGAGG CACTCCGGCG AGGGACGAGG AGACATTGCT GAAGAAGAAG GCCGCGGATT TAGCGCCTCA TTTGTCAGGG AGCAGCATTT TCCTCGTGGG TATGTCGAGA ACGGACAAGT CCACCGTGGG CAAGCACCTC TCGCAGGCTC TCGGGTACTA CTTCTTCGAC AGCATGGAAT TGGTGGAGAC GGCTGCCGGA GACGCCGTGC GGGAGATGAT CGAGCAAGAG CTTCTGGATG CTGAGACGGA AGTTCTCATG CAGCTGTCTC CCATGGTTCG TCTGGTCGTT GCCACGGGAG AAGGTGCCGT AGTCAGTCCG CGGAACTGGA GCTATTTGAG GACTGGAGTC ACCGTCTGGA TCGATGTGCC CGCGGATCAT CTGATTCAAA CCATCGCAGA ATCCGAGCCG CCTCCGGAGC TGGTGGATGA TACGAGAAAA ATGCTGAGAG CGAGAGCAGA GTACTACGCT AATGCTGATG TCACTGTCTC CATCGAGGAG CTTGCAGCCA AGAAGAACAT CGATGATTTG GCGTCACTCA CTGCTCCCAT GGTCGCTCTT CACGTTCTCG AAGAGATCGA TAGAGTTCTA AAGAAAGCGT AGATTCTTAC ACAGGATACT GAACAACCAA GACATGGGGC ATGTCTGTCT TGTAGGGTAG AGTAGATGGT GAGGAAGAGG TCAGCAAATT GCTGAATTTA TACTTGGACC ACGTTGACGA TCGGACGAGG TGCGGCTCCT CTCATTGTAT GGCACATACC AATGCATGTG CAAGTGCTCG CAATGTTCGT TACATGATTG TAGAGTCCGC CTCTGCGTGT CGCAGAGTAG GAGCCCACTC GGATCATGGG TAGCCCTCTC CTTCATGTAA TTTACAGGCA CAACAGATTC GTATATGACT TGAAGCTCCT AAGAGACCTG GACTTTTTGT ATACTGTGGC CAGCTGTCAT CTTCCACCAT TGAACAGGCG GGGGCCTGAT ACTAATGTCT TATCTGAGGA CGTTGGAAAA GATTCAAGCT CGATTGCTGC ATCTCGGTAG AGGTCCGAAG AGCGCTATGT TCCAAAACAT ATATATGATT TAGACGTCTG TGGTTTAAGT TCCTAATCAC AAGCAACTTC CTCACTGAAG CAACTCTCTT TGCCCCAGTC ATGAGGACAG TACAACAGAA GTGCTCGATC TGTAGATGTG CAATTGAGGA ATTTTGGTAT TT |
CDS |
| >Mp6g03600.1 ATGGCCGTAA TGGCTGGTCG GGTGGCGGAA TTGCTGGTTG CGACCTCTGT TCCGAGAAGG CCGAGCTCGC ACTCGAGCCA GCACGTGAGC GCAAGTGGGA GGGCCAGGGC CAAATGTGCA GCGAGCGCTG TGAGTTCGGG AGCTTGCTTA CTCACATCGT TCTGCCGTCC TCGGACGACG GGCAGCAGTG CAGGTCGAGC GAGGGCGATC TTCGCAGGGG CGGGAGGCAC TCCGGCGAGG GACGAGGAGA CATTGCTGAA GAAGAAGGCC GCGGATTTAG CGCCTCATTT GTCAGGGAGC AGCATTTTCC TCGTGGGTAT GTCGAGAACG GACAAGTCCA CCGTGGGCAA GCACCTCTCG CAGGCTCTCG GGTACTACTT CTTCGACAGC ATGGAATTGG TGGAGACGGC TGCCGGAGAC GCCGTGCGGG AGATGATCGA GCAAGAGCTT CTGGATGCTG AGACGGAAGT TCTCATGCAG CTGTCTCCCA TGGTTCGTCT GGTCGTTGCC ACGGGAGAAG GTGCCGTAGT CAGTCCGCGG AACTGGAGCT ATTTGAGGAC TGGAGTCACC GTCTGGATCG ATGTGCCCGC GGATCATCTG ATTCAAACCA TCGCAGAATC CGAGCCGCCT CCGGAGCTGG TGGATGATAC GAGAAAAATG CTGAGAGCGA GAGCAGAGTA CTACGCTAAT GCTGATGTCA CTGTCTCCAT CGAGGAGCTT GCAGCCAAGA AGAACATCGA TGATTTGGCG TCACTCACTG CTCCCATGGT CGCTCTTCAC GTTCTCGAAG AGATCGATAG AGTTCTAAAG AAAGCGTAG |
Protein |
| >Mp6g03600.1 MAVMAGRVAE LLVATSVPRR PSSHSSQHVS ASGRARAKCA ASAVSSGACL LTSFCRPRTT GSSAGRARAI FAGAGGTPAR DEETLLKKKA ADLAPHLSGS SIFLVGMSRT DKSTVGKHLS QALGYYFFDS MELVETAAGD AVREMIEQEL LDAETEVLMQ LSPMVRLVVA TGEGAVVSPR NWSYLRTGVT VWIDVPADHL IQTIAESEPP PELVDDTRKM LRARAEYYAN ADVTVSIEEL AAKKNIDDLA SLTAPMVALH VLEEIDRVLK KA |