Mp6g05010



Description

Annotation

Database ID Description
SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain
SUPERFAMILY SSF54373 FAD-linked reductases, C-terminal domain
PANTHER PTHR11787 RAB GDP-DISSOCIATION INHIBITOR
PRINTS PR00891 Rab GDI/REP protein family signature
Pfam PF00996 GDP dissociation inhibitor
Gene3D G3DSA:1.10.405.10 Guanine Nucleotide Dissociation Inhibitor, domain 1
PRINTS PR00892 Rab GDI protein signature
Gene3D G3DSA:3.50.50.60 -
FunFam G3DSA:1.10.405.10:FF:000002 Guanosine nucleotide diphosphate dissociation inhibitor
Gene3D G3DSA:3.30.519.10 Guanine Nucleotide Dissociation Inhibitor, domain 2
KEGG K17255 Rab GDP dissociation inhibitor
KOG KOG1439 RAB proteins geranylgeranyltransferase component A (RAB escort protein); [O]
MapolyID Mapoly0034s0016 -
GO GO:0016192 vesicle-mediated transport
GO GO:0015031 protein transport
GO GO:0007264 small GTPase-mediated signal transduction
GO GO:0005092 GDP-dissociation inhibitor activity
GO GO:0005737 cytoplasm
GO GO:0005093 Rab GDP-dissociation inhibitor activity

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Marchantia ortholog of Arabidopsis GDI2, a TMV p126-associated host factor; tested by Y2H but interaction not confirmed.

0 core 1 peripheral

Ros-Moner, E., et al. (2024) · Nature Communications  research sequence comparator
Marchantia ortholog of Arabidopsis GDI2, a TMV p126-associated host factor; tested by Y2H but interaction not confirmed.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g05010.1 chr6:6323512..6329779 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g05010 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g05010 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.