Mp6g09390
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF00080 | Copper/zinc superoxide dismutase (SODC) |
| Gene3D | G3DSA:2.60.40.200 | Superoxide dismutase, copper/zinc binding domain |
| SUPERFAMILY | SSF49329 | Cu,Zn superoxide dismutase-like |
| PANTHER | PTHR10003 | SUPEROXIDE DISMUTASE CU-ZN -RELATED |
| FunFam | G3DSA:2.60.40.200:FF:000006 | Copper chaperone for superoxide dismutase |
| KOG | KOG4656 | Copper chaperone for superoxide dismutase; N-term missing; [P] |
| MapolyID | Mapoly0152s0017 | - |
| GO | GO:0046872 | metal ion binding |
| GO | GO:0016532 | superoxide dismutase copper chaperone activity |
| GO | GO:0005507 | copper ion binding |
| GO | GO:0006801 | superoxide metabolic process |
| GO | GO:0005737 | cytoplasm |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSOD4 | Superoxido dismutase | Published |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp6g09390 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp6g09390.1 TGTTGCCATG GACCCTTTTC ACACGAAGAC GAAGGCGTTT ATATGCTGTC CTCATCCCCT CGAGTCCTCC AGCAGCAGCA GCAGCACCGA GAACGAGCTT CGGAGTTGAT AATCATCAGA GTGGATTGAA ATCTGAGGGG AAGGACGACA GGAAAAGGGG GCCCGGAGGT GGAGAATCCT TCAGACCCGG TTGGACTCGA GTCTTGGCTC ATCGGTCGGC GCTTCAGTGC CGTGCTTGGG GGTCGTTGTT TCATCTGCTG GCAGCTGCAA TTGGGAAGAA TTGCTCGGAT TGGAGCGGAA CTGCTTCGGT GGTGAATCGG TGAATGAGGC ATGGAGCTGT TGCAGTGTTA GGGAGGTCGA TTGATCGACT GACCGGTTGG TTTCTTGCGG AGGCGAGACG AGCTGGTGGT CGGTGATCGC GTCTCTGCGG CAGCGGCTGG GAGGATTGGC GGAGGCCGAG AGGATGAGTC TGGCCGTGTC GAATTCACCC TATCTCGGAC AAGTGTCCGC GGAGAGTAAC ATGATCGGAA TTCGGAGCTC CCTCGTACCC GATGTGGCTC GCAAGCTGTC TGCACAGGGT TTAGACGGAC CGTCTTCTCA CACTCCGATT TCTTTCGTCT TCTCCGACGA CAATGCCAAG CACGCCATCG GCCACTCCTA CTTAGAGGCA AAGCATCCCA TCCTATCCTG CTCTTAACTT GTTGCCTCAC GTTTTATCGA TGACCATGAA CTTGCTCTCC GAGAGGGACG AGGACTGCAC TCACGGGCGT GCGGACGCTC AATAATTCTG CATTCTGAAT TTTCTCTCTG TACAGTTTAT CAGCTGGAGG TATTGGTCCA TACGAAATTC TCAACAATCG TTTGCCTTAA TGATAGAACT TGTACAATCT CCTGACCACA GGACTCTCAA AATCTTGTCC GTCTCGTGGA GCTATCTTCT GAGTCGATGA TAGTGTCGCC CTTTTGCAGA GGATGGTTGA GAGTAACGGG AAGGAGTTCA AGTCCACCGG CAGCCAAGCG CCGGTCGTCA GCAGCTCTAC TCGACCCGTC TCCGCCGGTA CGTGCTGAAG TCCACCTGCG ACCGGCTGAA TCGGGCACCT CAATGTTGCG TCTGCTCTGT CGGCGCATTC AGTTGCTGTT GAGCTTGAGA GGCCCGAATC GAAATTCCCG AAATTCCATG GGGTCGCAAT GTGCTCCATT TGACTGTCTG TCTGGTCCAT GCTCTGCAGG AATTTGCTCG TTTATTCGAA GCGAGGACGG AGTGGCGGAA TTCAGAGGGC CCGCCGTCCA CGGACTGGTG CGGTTTGCTC AGATGAGCGA GCTCGAGTCG CAAATCGAGG CCACCTTCGA CGGTTTGACT CCAGGCCTGC ACAGCTGGTC TGTGAATGAG TACGGGGATG TGCGCGAGGG TGCTGCCAGC ACGGGACTCC CCTACTCCCG AGTCTCCACC TCGACCGGAC CTTCGGTCTG TTCTTCACTC ATGATTCCTT GTATCCTTGA CTGCCTTCGA GGACAGTTTC TTTGTCGTAA GATGCAACAT CATTGCTGAT TGAATTGGCG ATGTGGAATG GAATTTGGTG AGCAGGGCAA GCACGAGGAG GAAGTGGAGA TGGCAGGCAT GCTCGGAACT TTGGTGGCCG ACAGCACCGG GCACGCCGAG TTCAGCTCCA GAAGCTCTCG ATTGGCAGTT TGGGACATCA TTGGACGCTC TGTTGTTGTC TACCAGTCCT CTCATGGAAA GCTTCAGAAC ACGAAAGATG CCATCGCTTG CGCAGTCATT GCGAGAAGCT CCGTGCCTGG AGCGGGCGGA GCGAAACAAC TCTGCAGCTG CGATGGGACT GTGATCTGGC AATCTTCTGT ACTTAGTTAG TTAGTTAGTC GCAATTGCAC ATTCTTAGTC TACATTAGTA ATCTTGTGCA TATGTAAAGC TTTTATGATG ATTACATCCC ATCGTCGCAC ATTTAATCTT TCTTTTGGCG CCGCCGGTCC TCCGACGCTG TCTGATCTTC AATTTTTGCG ATCCCTTGTC GGATCCATCG CCACAAACGT TTGCTCGACG GGTCAACAAA GCTGAACACA CCCTTTCGAC GATGCATGCT TTGCTCACAT GACCTGGAAC TGTCCGCAGT GATTGCAGCG GTTGAGAGTC GATTGGAACT CTTGCCGGAT TCTAGGCAGA GTTGGACTGT CTCAATCAAG TTACACCATA TTCTGTTATC TCAAGAGAGA TACAAGTAGA AGATTTCAGA CCACGTTCCG ATGGACATGA TCATAACTTG TCCATCTCAA GAAAAGACTC AACTGAGTGT ATTCTTCTCA GTATCACATC AAGAAATTCT GTTCAGCTGA GATCATTAC |
mRNA UTR + CDS |
| >Mp6g09390.1 TGTTGCCATG GACCCTTTTC ACACGAAGAC GAAGGCGTTT ATATGCTGTC CTCATCCCCT CGAGTCCTCC AGCAGCAGCA GCAGCACCGA GAACGAGCTT CGGAGTTGAT AATCATCAGA GTGGATTGAA ATCTGAGGGG AAGGACGACA GGAAAAGGGG GCCCGGAGGT GGAGAATCCT TCAGACCCGG TTGGACTCGA GTCTTGGCTC ATCGGTCGGC GCTTCAGTGC CGTGCTTGGG GGTCGTTGTT TCATCTGCTG GCAGCTGCAA TTGGGAAGAA TTGCTCGGAT TGGAGCGGAA CTGCTTCGGT GGTGAATCGG TGAATGAGGC ATGGAGCTGT TGCAGTGTTA GGGAGGTCGA TTGATCGACT GACCGGTTGG TTTCTTGCGG AGGCGAGACG AGCTGGTGGT CGGTGATCGC GTCTCTGCGG CAGCGGCTGG GAGGATTGGC GGAGGCCGAG AGGATGAGTC TGGCCGTGTC GAATTCACCC TATCTCGGAC AAGTGTCCGC GGAGAGTAAC ATGATCGGAA TTCGGAGCTC CCTCGTACCC GATGTGGCTC GCAAGCTGTC TGCACAGGGT TTAGACGGAC CGTCTTCTCA CACTCCGATT TCTTTCGTCT TCTCCGACGA CAATGCCAAG CACGCCATCG GCCACTCCTA CTTAGAGAGG ATGGTTGAGA GTAACGGGAA GGAGTTCAAG TCCACCGGCA GCCAAGCGCC GGTCGTCAGC AGCTCTACTC GACCCGTCTC CGCCGGAATT TGCTCGTTTA TTCGAAGCGA GGACGGAGTG GCGGAATTCA GAGGGCCCGC CGTCCACGGA CTGGTGCGGT TTGCTCAGAT GAGCGAGCTC GAGTCGCAAA TCGAGGCCAC CTTCGACGGT TTGACTCCAG GCCTGCACAG CTGGTCTGTG AATGAGTACG GGGATGTGCG CGAGGGTGCT GCCAGCACGG GACTCCCCTA CTCCCGAGTC TCCACCTCGA CCGGACCTTC GGGCAAGCAC GAGGAGGAAG TGGAGATGGC AGGCATGCTC GGAACTTTGG TGGCCGACAG CACCGGGCAC GCCGAGTTCA GCTCCAGAAG CTCTCGATTG GCAGTTTGGG ACATCATTGG ACGCTCTGTT GTTGTCTACC AGTCCTCTCA TGGAAAGCTT CAGAACACGA AAGATGCCAT CGCTTGCGCA GTCATTGCGA GAAGCTCCGT GCCTGGAGCG GGCGGAGCGA AACAACTCTG CAGCTGCGAT GGGACTGTGA TCTGGCAATC TTCTGTACTT AGTTAGTTAG TTAGTCGCAA TTGCACATTC TTAGTCTACA TTAGTAATCT TGTGCATATG TAAAGCTTTT ATGATGATTA CATCCCATCG TCGCACATTT AATCTTTCTT TTGGCGCCGC CGGTCCTCCG ACGCTGTCTG ATCTTCAATT TTTGCGATCC CTTGTCGGAT CCATCGCCAC AAACGTTTGC TCGACGGGTC AACAAAGCTG AACACACCCT TTCGACGATG CATGCTTTGC TCACATGACC TGGAACTGTC CGCAGTGATT GCAGCGGTTG AGAGTCGATT GGAACTCTTG CCGGATTCTA GGCAGAGTTG GACTGTCTCA ATCAAGTTAC ACCATATTCT GTTATCTCAA GAGAGATACA AGTAGAAGAT TTCAGACCAC GTTCCGATGG ACATGATCAT AACTTGTCCA TCTCAAGAAA AGACTCAACT GAGTGTATTC TTCTCAGTAT CACATCAAGA AATTCTGTTC AGCTGAGATC ATTAC |
CDS |
| >Mp6g09390.1 ATGAGTCTGG CCGTGTCGAA TTCACCCTAT CTCGGACAAG TGTCCGCGGA GAGTAACATG ATCGGAATTC GGAGCTCCCT CGTACCCGAT GTGGCTCGCA AGCTGTCTGC ACAGGGTTTA GACGGACCGT CTTCTCACAC TCCGATTTCT TTCGTCTTCT CCGACGACAA TGCCAAGCAC GCCATCGGCC ACTCCTACTT AGAGAGGATG GTTGAGAGTA ACGGGAAGGA GTTCAAGTCC ACCGGCAGCC AAGCGCCGGT CGTCAGCAGC TCTACTCGAC CCGTCTCCGC CGGAATTTGC TCGTTTATTC GAAGCGAGGA CGGAGTGGCG GAATTCAGAG GGCCCGCCGT CCACGGACTG GTGCGGTTTG CTCAGATGAG CGAGCTCGAG TCGCAAATCG AGGCCACCTT CGACGGTTTG ACTCCAGGCC TGCACAGCTG GTCTGTGAAT GAGTACGGGG ATGTGCGCGA GGGTGCTGCC AGCACGGGAC TCCCCTACTC CCGAGTCTCC ACCTCGACCG GACCTTCGGG CAAGCACGAG GAGGAAGTGG AGATGGCAGG CATGCTCGGA ACTTTGGTGG CCGACAGCAC CGGGCACGCC GAGTTCAGCT CCAGAAGCTC TCGATTGGCA GTTTGGGACA TCATTGGACG CTCTGTTGTT GTCTACCAGT CCTCTCATGG AAAGCTTCAG AACACGAAAG ATGCCATCGC TTGCGCAGTC ATTGCGAGAA GCTCCGTGCC TGGAGCGGGC GGAGCGAAAC AACTCTGCAG CTGCGATGGG ACTGTGATCT GGCAATCTTC TGTACTTAGT TAG |
Protein |
| >Mp6g09390.1 MSLAVSNSPY LGQVSAESNM IGIRSSLVPD VARKLSAQGL DGPSSHTPIS FVFSDDNAKH AIGHSYLERM VESNGKEFKS TGSQAPVVSS STRPVSAGIC SFIRSEDGVA EFRGPAVHGL VRFAQMSELE SQIEATFDGL TPGLHSWSVN EYGDVREGAA STGLPYSRVS TSTGPSGKHE EEVEMAGMLG TLVADSTGHA EFSSRSSRLA VWDIIGRSVV VYQSSHGKLQ NTKDAIACAV IARSSVPGAG GAKQLCSCDG TVIWQSSVLS |