Mp6g09620



Description

Annotation

Database ID Description
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
SMART SM00320 WD40_4
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
PRINTS PR00320 G protein beta WD-40 repeat signature
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR19923 WD40 REPEAT PROTEINPRL1/PRL2-RELATED
Gene3D G3DSA:2.130.10.10 -
FunFam G3DSA:2.130.10.10:FF:000012 Putative pleiotropic regulator 1
Pfam PF00400 WD domain, G-beta repeat
CDD cd00200 WD40
SUPERFAMILY SSF50978 WD40 repeat-like
KEGG K12862 pleiotropic regulator 1
KOG KOG0285 Pleiotropic regulator 1; [A]
MapolyID Mapoly0016s0006 -
GO GO:0071011 precatalytic spliceosome
GO GO:0071013 catalytic step 2 spliceosome
GO GO:0000974 Prp19 complex
GO GO:0005515 protein binding
GO GO:0000398 mRNA splicing, via spliceosome

Nomenclature

Gene symbol Product Transcript ID Status
MpPRL1 G protein beta WD-40 repeat signature Published

Transcript models

Transcript ID Location Sequences Extract region
Mp6g09620.1 chr6:12656724..12664759 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g09620 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g09620 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.