Mp6g09830



Description

Annotation

Database ID Description
Gene3D G3DSA:1.10.1520.10 Ribonuclease III domain
SUPERFAMILY SSF69065 RNase III domain-like
SUPERFAMILY SSF54768 dsRNA-binding domain-like
ProSitePatterns PS00517 Ribonuclease III family signature.
SMART SM00535 riboneu5
PANTHER PTHR14950 DICER-RELATED
ProSiteProfiles PS50821 PAZ domain profile.
ProSiteProfiles PS50142 Ribonuclease III family domain profile.
FunFam G3DSA:1.10.1520.10:FF:000004 Endoribonuclease dicer-like 1
Pfam PF00636 Ribonuclease III domain
CDD cd00593 RIBOc
Pfam PF02170 PAZ domain
Gene3D G3DSA:2.170.260.10 paz domain
SMART SM00949 PAZ_2_a_3
KEGG K11592 endoribonuclease Dicer [EC:3.1.26.-]
KOG KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases; N-term missing; [A]
MapolyID Mapoly0016s0027 -
GO GO:0005634 nucleus
GO GO:0003723 RNA binding
GO GO:0006396 RNA processing
GO GO:0030422 siRNA processing
GO GO:0005515 protein binding
GO GO:0004525 ribonuclease III activity
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpDCL1b miRNA biogenesis protein Published
MpDCL1a, MpDCL1b, and MpDCL3 were originally assigned to Mp1g02840 (Mapoly0113s0032), Mp7g12090 (Mapoly0003s0222), and Mp6g09830 (Mapoly0016s0027), respectively, in Bowman et al. 2017 (10.1016/j.cell.2017.09.030). However, based on later studies, MpDCL1a, MpDCL1b, and MpDCL3 are now assigned to Mp7g12090, Mp6g09830, and Mp1g02840, respectively (10.1093/jxb/erac098; 10.1111/tpj.17236).

Associated Literature (AI-based literature mining, Beta-version)

Atypical DCL (PAZ+dual RNaseIII only, moss/fern-specific); mutant near-WT but deformed gametangiophores and strongly enhanced salt tolerance; salt sensitivity depends on MpDCL1b.

1 core 4 peripheral

Csicsely, E., et al. (2025) · The Plant Journal  research experimental subject
Atypical DCL (PAZ+dual RNaseIII only, moss/fern-specific); mutant near-WT but deformed gametangiophores and strongly enhanced salt tolerance; salt sensitivity depends on MpDCL1b.
Balcerowicz M. (2025) · The Plant journal : for cell and molecular biology  other citation background
DICER-LIKE gene (DCL1 subclade) discussed; MpDCL1b has a reduced domain structure (PAZ + two RNase III).
Pietrykowska, H., et al. (2023) · Plant Molecular Biology  review citation background
miRNA/tasiRNA target module (Pietrykowska 2023)
Pietrykowska, H., et al. (2022) · Journal of Experimental Botany  review citation background
miRNA pathway gene (Pietrykowska 2022)
Ros-Moner, E., et al. (2024) · Nature Communications  research experimental background
Upregulated upon TMV infection (non-canonical DCL); reported among altered RNA-silencing genes.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g09830.1 chr6:12880687..12889706 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g09830.2 chr6:12881370..12889694 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.