Mp6g13240



Description

Annotation

Database ID Description
FunFam G3DSA:1.20.58.1040:FF:000001 Glucan endo-1,3-beta-glucosidase 4
SUPERFAMILY SSF51445 (Trans)glycosidases
Gene3D G3DSA:1.20.58.1040 -
FunFam G3DSA:3.20.20.80:FF:000002 Glucan endo-1,3-beta-glucosidase 3
Pfam PF07983 X8 domain
Pfam PF00332 Glycosyl hydrolases family 17
ProSitePatterns PS00587 Glycosyl hydrolases family 17 signature.
Gene3D G3DSA:3.20.20.80 Glycosidases
PANTHER PTHR32227 GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED
SMART SM00768 X8_cls
MapolyID Mapoly0059s0025 -
GO GO:0005975 carbohydrate metabolic process
GO GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO GO:0046658 obsolete anchored component of plasma membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpGH17.17 Cell wall related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp6g13240.1 chr6:16506823..16512126 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g13240 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g13240 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.