Mp6g13460



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS00028 Zinc finger C2H2 type domain signature.
Coils Coil Coil
KOG KOG0733 Nuclear AAA ATPase (VCP subfamily); C-term missing; [O]
MapolyID Mapoly0059s0004 -

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Target of MpmiR11865, encoding an ATPase valosin-containing protein. RT-qPCR shows inverse correlation with miRNA accumulation and the cleavage site lies within the 3'-UTR.

1 core 0 peripheral

Aggarwal, B., et al. (2024) · RNA Biology  research experimental subject
Target of MpmiR11865, encoding an ATPase valosin-containing protein. RT-qPCR shows inverse correlation with miRNA accumulation and the cleavage site lies within the 3'-UTR.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g13460.1 chr6:16710050..16719072 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g13460.2 chr6:16710050..16718757 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g13460 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g13460 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.