Mp6g16450
Description
Annotation
| Database | ID | Description |
|---|---|---|
| CDD | cd01866 | Rab2 |
| FunFam | G3DSA:3.40.50.300:FF:000263 | Ras-related protein RABB1c |
| SMART | SM00176 | ran_sub_2 |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. |
| Gene3D | G3DSA:3.40.50.300 | - |
| SMART | SM00174 | rho_sub_3 |
| SMART | SM00175 | rab_sub_5 |
| PRINTS | PR00449 | Transforming protein P21 ras signature |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. |
| Pfam | PF00071 | Ras family |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases |
| SMART | SM00173 | ras_sub_4 |
| NCBIfam | TIGR00231 | small GTP-binding protein domain |
| PANTHER | PTHR47979 | DRAB11-RELATED |
| KEGG | K07877 | Ras-related protein Rab-2A |
| KOG | KOG0098 | GTPase Rab2, small G protein superfamily; [U] |
| MapolyID | Mapoly0170s0032 | - |
| GO | GO:0003924 | GTPase activity |
| GO | GO:0016192 | vesicle-mediated transport |
| GO | GO:0005794 | Golgi apparatus |
| GO | GO:0005525 | GTP binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpRAB2A | RAB GTPase | Published |
Associated Literature (AI-based literature mining, Beta-version)
RAB GTPase; genome paper: Mapoly0170s0032.1 (from nomenclature)
0 core 1 peripheral
Minamino, N., et al. (2018)
· Plant and Cell Physiology research experimental background
MpRAB2a secretory RAB GTPase paralog
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp6g16450 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp6g16450.1 GGAGAGGGGA GGGCGGAGGC GAGAGGGAAG GGAAAAGGGG AGGGGCCCCA TTTGCGAGCA GTGTGATTGG ATTGGAAGGA GGAAGTTACT GGCGACTGAG TCACACGATC GGACACGCAG CAGCAGCTAA TATACAAGTG TTCGATTGCG AGCTCTCTTT TCTGCTGATT TCTTTGGCAG GCAGGCAGGC AGGCAAGGCA TCGACGAGGA GATTGCTTGC TGCCATCCGT CCTTGTAGTA GTATCCCGAA TGGTTTGTAC GTAAGTGTCT GGAGCGGAGC GAGCTTGAAG AGGAGGCTGG GAGGGAGGCA GGCAGGCAGG GAGGACGAGC ACGAGGACGA AGGGGACGAC GAGGACGAGG AGAGGAAGAA TCTACAAGGA CTGACGGCTG CGCCTCGAGC TTTGAACCAT GTCTTACGCG TACCTCTTCA AGTATATTAT CATAGGCGAC ACTGGTATGA TTGATGGTGA TTTGCTGTGA TTTCGAGCGT ATCGCGGTGG GGTAGGGGGT GGGTTTAGAG AAATTGCTTG CAATCTTGGT GTGGCGGAGC AGAGGAGGAG GAGATTAGGT TTGCCGGGGC CGCCGAGATT GAGAATTGGT GGTCCGGATA TGTGCAGGTG TCGGGAAATC ATGCCTTCTT TTGCAATTCA CAGACAAACG GTTCCAGCCC GTACATGATC TAACTATCGG CGTGGAGTTT GGTGCGCGCA TGATCACGAT CGATAGCAAA CCTATCAAAC TCCAAATCTG GGATACGGTA TGCGCTCGAC ATCTTTCTTT CTGACGGCTT GAGTCCCGAA GGTCAGTCGG AGCGTAGTAA TCTTTCGTAC GCTTTGTGAC TGTGAGACGA ATTCGATATC ACGTAGGCGA CTTCGATCAC TTGCGTTTCG TACCCCATCG TCACATTGGA TTGAAAACCA TTGGTATGGA CGGTAGGATA TGATTCGTCG ACTATGTGGG CTCCTGAAGC GTCTAGAGCC GTGTGAGCAT TCATCGCACG ATTCTCCACA TCGCAAGAAC TGCCATCTTT GAAGCCGTTT ACTCATAGCT GGCAATTTGG TGTGTTGCAA CGGTAGAAGT GTCCTGGTCT TGTCGAGATC TACACTTCAA GAACAGGCCG GGTGTTGCTG ACATCTGAAT GAATGCAAGG CGTCTCCATG CTTCACGCCA AAGCAAGGTC TTTCAGTTGC GTTGACTTTC TGGTTGAGAT TTTTCTTGCT GGTCAATCTA CCATGATTTA TCGCCGTCTC ACGTATACGG CTTCTTGTCT TTCTCACCTT GTCCACTTCT GTTCGCCTCA AGTGTGTCAA TGCATTTTCG TTCTTCTGTG AGGTCTGCTA TCATTTCGCA CTTATGAAGC CCGGGGTCTT GAATCACGGT TACTGAGGTT TTGGGAAAAA TCCCTTGTAT ACACTTGGAC AGAGGGGTAG ACACCTTCGT ATCCTGTAAT ACTACTAGCT AAACAGATTC CGCGAGCTCC ATGCTGACTG AAAGCTTGTT TGAACGATGT ATTCTACCTG TAACTGCATG TGTCCTGTCT TTGGACTTCT TCGTATCGGT CAAATCATGG ACTTGTACAT CATTAAATGG AAGGCAGATG TAATGAAACG GAAAGAAAAA ATTTTCTTCA AAGCGGATTT GTGATTGAAT TTAGAGTCAC CGCTAAATCT GCAAGCCATG TAGACTCCTG GATTGTCTGG AAGAGCTGAT TAAAATCACA AATTACCCAT ATGCTGACCT TGAAATGAAG AGTGAAACGA CTGCTGAGCT ATGTAGGTGA TGCAAATAAG TGCTCATTTT ATGCTTGTAA CTGGACAGGC TGGACAAGAG TCATTTCGGT CGATCACAAG GTCTTACTAT AGAGGCGCAG CTGGGGCTCT ACTTGTCTAC GATATCACCA GGTGTGTATC TATTTCTGGG CAAACCAAAG ATAGGGTGCT GTGAAGTCCA CGATGCTAAG TTTATCTTTC TAATGCGTTA TCTATAAACA AAAGGCACGT TTTTTTTTCG AAAAAATAAT TTGACGTAGC TTGCTGAAGA GCTTGCTTGA CACTGGACGT TGTGAACGAA CAGGAGAGAA ACATTCAATC ACCTTGCAAG TTGGCTGGAA GATGCACGGC AACACGCAAA TTCCAATATG ACTATTATGC TTATCGGGAA CAAGTGCGAT CTTGCTCATA GAAGAGCTGT TAGCACGGAA GAAGGTGAAC AATTTGCGAA GGAGAATGGA CTGGTGTTTA TGGAAACATC TGCGAAAACA GCTTTTAATG TTGAAGAGGT AAAGAACTGC GATATTCTGA CTTGGTTGTA TGCTAATTTG TCAGTTTTGT TAACCCTCAC GTATATCAAA TTATATGCTG AAAAGGATAA TTATCTGAAA GCTCTACGGC AGTGGTGGAC TTAACAATAC TTGCGCCTTG GTAACTGGTC TGGTCGGACG CGTGACACTG ATCTATGTAT GGTGCCTTGC AATCTGGAAT TATCATGGCA GGCATTTATA AACACGGCGG CAAAGATTTA TCAGAAGATC GAGGAGGGAA TTTTTGATGT GTCTAATGAG GTGAGTCTTG AACCAAGTTT GACCGTTTGC ATTCATCTAA TAAGCTCAAG TATGTATGCC CTTGCCAATT TGTTTGCACT TATCCGCTCT TGATTGTGCC TTCTGACAAT TGCGACATAA TTATCTCGAT CGCGACCGAG GGGTCACGCC TGTGTTGTAT CCTGAAACAC ATCGAGGGTG GCGTTCATCT TAGCTTTCTT GGGAAGAGGA AAAGGGCATG AAAGATTCCC TTTTCCGAAA TAAGATACTC GGAAGTGACT TCTTTAGACC TCTATATCTT GCTCTTCGAA ACTTGGAACG GATCGTCTTT GATATTTATC AGCATCGGGA AAGAACGATT GCACTTTACG TCATGAGTAG TTAGTTACCT CGTTATTGTG AGTCGGCTAG CAGTCTCAAA CGTGAGTTGG ATCTGTTGCA GTCCTACGGT ATCAAAGTAG GTTACGGAGG AGGAGCTGGC ACGGCAGGGG CAGGCCGAGG GGACGCGTCA TTGGCTCCCA AAGGTGGTTG CTGTGGTTGA TGAAAGCCCT GCAGACGGAG TAGAAGCTGA CGTGTCATGG CTCACGGTTG ATTTGTTACA ATTGAATGTT TCTTGTCACT GGTGTATAAA TGTTGGAAGA GTCTGTTCTC GGACAAGTAA AACGCTATGT TATGCCACTG GAGGATGCCT CGGCAGCCTT CATGCTGGAC GTCAAAGTCG ACCGTTTACA GCTTCTGTAC TTGTGCCTGG CATAGTGCCT TACTTTGGTA GCTGCGACAA ATGGAGAGGA AATCAGCCAT CCGTCACTAG GACCATCGCT TACTTTGTTC CTTGCAGTCT GCTTACTTTG TTTCTTGCAA CTGCGAGGAT TGTCTGGCCT CTTTTGTTGA ATAAGGTTTA CGCTTTGTAC AGTTTTGGCT GGTCAATGCT ATTAGGTCAA GCATTGAATT ACCTCTATAT ACATGATTTA TTTCTGTGTG GTATATCAAA CCTTTTGTCA CGCTTGGTCA TCGATGAAGG TTTCCAAGTG GTGCGTTGTA ATGGTGAAGA TTTGGGACTT GGACAACACA CGTATTACAG GCAGTTTAGG ATTGAAGCGT AGAAATTGAA CATATTTATC TTGTCTATCA TGTGGAAGAT GAAGCTTGGA AGTTTGTGTT CACAAGCTTC ATGGCTCCCG GTGCCAAACA GTGTCATGTT TTAGTCAGCA AACTCTTGAT AAAGGTGAAT ATGTGACTGT TCGATTCTGA GACTCGACCC GTAGGACCGG GAGTGGCTTG AGATCTCGCT TTCAGCTTGT CTGTTTGATG AACCAGTCAC CTTGTCTTTG TCAAGGTGCA TGAATTGTAC CAATTCAGAG GCTATGTAAT GTATCAAGCA AATATTCTAA AAGTTTTATC CTGGACGAGT CTCAAGACGC ACAATAGCCT AAAGCTCATG AACTTTCCAA ACACAGCTGT CAA |
mRNA UTR + CDS |
| >Mp6g16450.1 GGAGAGGGGA GGGCGGAGGC GAGAGGGAAG GGAAAAGGGG AGGGGCCCCA TTTGCGAGCA GTGTGATTGG ATTGGAAGGA GGAAGTTACT GGCGACTGAG TCACACGATC GGACACGCAG CAGCAGCTAA TATACAAGTG TTCGATTGCG AGCTCTCTTT TCTGCTGATT TCTTTGGCAG GCAGGCAGGC AGGCAAGGCA TCGACGAGGA GATTGCTTGC TGCCATCCGT CCTTGTAGTA GTATCCCGAA TGGTTTGTAC GTAAGTGTCT GGAGCGGAGC GAGCTTGAAG AGGAGGCTGG GAGGGAGGCA GGCAGGCAGG GAGGACGAGC ACGAGGACGA AGGGGACGAC GAGGACGAGG AGAGGAAGAA TCTACAAGGA CTGACGGCTG CGCCTCGAGC TTTGAACCAT GTCTTACGCG TACCTCTTCA AGTATATTAT CATAGGCGAC ACTGGTGTCG GGAAATCATG CCTTCTTTTG CAATTCACAG ACAAACGGTT CCAGCCCGTA CATGATCTAA CTATCGGCGT GGAGTTTGGT GCGCGCATGA TCACGATCGA TAGCAAACCT ATCAAACTCC AAATCTGGGA TACGGCTGGA CAAGAGTCAT TTCGGTCGAT CACAAGGTCT TACTATAGAG GCGCAGCTGG GGCTCTACTT GTCTACGATA TCACCAGGAG AGAAACATTC AATCACCTTG CAAGTTGGCT GGAAGATGCA CGGCAACACG CAAATTCCAA TATGACTATT ATGCTTATCG GGAACAAGTG CGATCTTGCT CATAGAAGAG CTGTTAGCAC GGAAGAAGGT GAACAATTTG CGAAGGAGAA TGGACTGGTG TTTATGGAAA CATCTGCGAA AACAGCTTTT AATGTTGAAG AGGCATTTAT AAACACGGCG GCAAAGATTT ATCAGAAGAT CGAGGAGGGA ATTTTTGATG TGTCTAATGA GTCCTACGGT ATCAAAGTAG GTTACGGAGG AGGAGCTGGC ACGGCAGGGG CAGGCCGAGG GGACGCGTCA TTGGCTCCCA AAGGTGGTTG CTGTGGTTGA TGAAAGCCCT GCAGACGGAG TAGAAGCTGA CGTGTCATGG CTCACGGTTG ATTTGTTACA ATTGAATGTT TCTTGTCACT GGTGTATAAA TGTTGGAAGA GTCTGTTCTC GGACAAGTAA AACGCTATGT TATGCCACTG GAGGATGCCT CGGCAGCCTT CATGCTGGAC GTCAAAGTCG ACCGTTTACA GCTTCTGTAC TTGTGCCTGG CATAGTGCCT TACTTTGGTA GCTGCGACAA ATGGAGAGGA AATCAGCCAT CCGTCACTAG GACCATCGCT TACTTTGTTC CTTGCAGTCT GCTTACTTTG TTTCTTGCAA CTGCGAGGAT TGTCTGGCCT CTTTTGTTGA ATAAGGTTTA CGCTTTGTAC AGTTTTGGCT GGTCAATGCT ATTAGGTCAA GCATTGAATT ACCTCTATAT ACATGATTTA TTTCTGTGTG GTATATCAAA CCTTTTGTCA CGCTTGGTCA TCGATGAAGG TTTCCAAGTG GTGCGTTGTA ATGGTGAAGA TTTGGGACTT GGACAACACA CGTATTACAG GCAGTTTAGG ATTGAAGCGT AGAAATTGAA CATATTTATC TTGTCTATCA TGTGGAAGAT GAAGCTTGGA AGTTTGTGTT CACAAGCTTC ATGGCTCCCG GTGCCAAACA GTGTCATGTT TTAGTCAGCA AACTCTTGAT AAAGGTGAAT ATGTGACTGT TCGATTCTGA GACTCGACCC GTAGGACCGG GAGTGGCTTG AGATCTCGCT TTCAGCTTGT CTGTTTGATG AACCAGTCAC CTTGTCTTTG TCAAGGTGCA TGAATTGTAC CAATTCAGAG GCTATGTAAT GTATCAAGCA AATATTCTAA AAGTTTTATC CTGGACGAGT CTCAAGACGC ACAATAGCCT AAAGCTCATG AACTTTCCAA ACACAGCTGT CAA |
CDS |
| >Mp6g16450.1 ATGTCTTACG CGTACCTCTT CAAGTATATT ATCATAGGCG ACACTGGTGT CGGGAAATCA TGCCTTCTTT TGCAATTCAC AGACAAACGG TTCCAGCCCG TACATGATCT AACTATCGGC GTGGAGTTTG GTGCGCGCAT GATCACGATC GATAGCAAAC CTATCAAACT CCAAATCTGG GATACGGCTG GACAAGAGTC ATTTCGGTCG ATCACAAGGT CTTACTATAG AGGCGCAGCT GGGGCTCTAC TTGTCTACGA TATCACCAGG AGAGAAACAT TCAATCACCT TGCAAGTTGG CTGGAAGATG CACGGCAACA CGCAAATTCC AATATGACTA TTATGCTTAT CGGGAACAAG TGCGATCTTG CTCATAGAAG AGCTGTTAGC ACGGAAGAAG GTGAACAATT TGCGAAGGAG AATGGACTGG TGTTTATGGA AACATCTGCG AAAACAGCTT TTAATGTTGA AGAGGCATTT ATAAACACGG CGGCAAAGAT TTATCAGAAG ATCGAGGAGG GAATTTTTGA TGTGTCTAAT GAGTCCTACG GTATCAAAGT AGGTTACGGA GGAGGAGCTG GCACGGCAGG GGCAGGCCGA GGGGACGCGT CATTGGCTCC CAAAGGTGGT TGCTGTGGTT GA |
Protein |
| >Mp6g16450.1 MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DSKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW LEDARQHANS NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE NGLVFMETSA KTAFNVEEAF INTAAKIYQK IEEGIFDVSN ESYGIKVGYG GGAGTAGAGR GDASLAPKGG CCG |