Mp6g18000
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SUPERFAMILY | SSF47473 | EF-hand |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. |
| Gene3D | G3DSA:1.10.238.10 | - |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. |
| CDD | cd00051 | EFh |
| SMART | SM00054 | efh_1 |
| FunFam | G3DSA:1.10.238.10:FF:000089 | calmodulin-like protein 3 |
| PANTHER | PTHR10891 | EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN |
| Pfam | PF13499 | EF-hand domain pair |
| KEGG | K13448 | calcium-binding protein CML |
| KOG | KOG0027 | Calmodulin and related proteins (EF-Hand superfamily); [T] |
| MapolyID | Mapoly0038s0010 | - |
| GO | GO:0005509 | calcium ion binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpCML42 | PAMP-responsive gene | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
PAMP-responsive gene (from nomenclature)
0 core 4 peripheral
Redkar, A., et al. (2022)
· New Phytologist research experimental comparator
Calmodulin-like 42 homolog (Mapoly0038s0010); PAMP-responsive marker.
Gimenez-Ibanez, S., et al. (2019)
· Current Biology research experimental comparator
Calmodulin-like defense marker (Mapoly0038s0010).
Iwakawa, H., et al. (2021)
· Plant & Cell Physiology research experimental background
Calmodulin-like; immune-marker gene whose induction is suppressed by Pseudomonas effectors (readout).
Michavila S, Espinosa-Cores L, Kneeshaw S, Torres S, Siroka J, Zamarreno AM, Gonzalez-Zuloaga M, Garcia-Mina JM, Novak O, Solano R, Gimenez-Ibanez S. (2026)
· Plant & cell physiology research experimental background
Calmodulin-like (CML42) defense gene detected in the transcriptome.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp6g18000 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp6g18000.1 GGGTTTATGG TAACATGTTA GGTGGACCTC TGAGTGTTGT ATAATACATA TTTATTATAC TGTATTATAC CACGCAGTAC CCGAAGAATT CAATTATACA AATCCATAGT TTCTCCCCGA GCTTTCGGCG TTGGGCACAT TTGCTCCGTG GGGGCCGACG AAGGACGAAA GACGAGCGCT CGATCGCTGG GACTCGCGAG CTTTGCACAC CAGCTTTCTC GCTGCTGGGA GCTTCGCTGC ACGGGGCGAC GGGTCACGTG GTGGGGCTTC GACGCGTGCC AGCAGTTTCT GGGCATCTTC TCCCGTTTGG CGGAAAGGCC TGTTTCGATC GAGCTTATAT GAGCTTCCCG GGCCATGGTC ACCCCACACT TCCACACTTC CCCGTCGCAC CCGCAGCTCT CGAGCCTTCG GCACTTCGCC CTCGCCCACT CCGCTTCTCG AGCTTAATTT CTGCATGAAT CACGAATTTC GCCTAGCTTA CAATTCCCCA TCCTCGAACC GGTCTCTCGC CTTCGAATTG CCGCGCACAA TTGAATTCGA AGCACCGATC TCTCATTTAG CTGCGAATCC CATTGTAGTC GCGGTGAGCT TTATATTGCT GCGGTGCAGA TTCCGGGTCA AACGAGCGAG CCAACCGTCG GACGCGTAGC GTCGTCGGAC TCCCGAAAGT TGCAGCTTCT GCGGGTTGCA CAGATTAGAA CTTGACGGGG CAAGGGAGCG CAATTCCTTG ATTCCCTTGT ATTCTTCCCG AGGCAAGTGC CTCGGCCTCC ACAGCGGCGG AAGTCGAATT CGGAGCTGTG ACCGAGGGAG ATATGGCAGC GGTGCATTCG CAGATGGTGT TGAGCAGCGT CGGCAACATC AGCAGGCACA GCAGCAGCAG GAGCATTCAA TCGGTGCACT TCGAGGCGAC GCGATTCGCG AGCTACGCGA CCGAGGGGTG TTCGGACGAC GAGGCCACGC CGAGGAGCTA CGAATCGGGT GGTGCCAGCT CCATGACCTG GAATGCGGCG GAGATGAAGA GAGTGTTCGA AAAGGTGGAC GAGAACGACG ACGGCCTCAT ATGCGCTCAA GATCTGCTCA GATTCATGAC CCGCCTCGGA TTTCAGCTGT CGCAGGACGA GGCCGTGTCC ATGCTCGAGA GCGTGGACAG CAACGGCGAC GGGCGCGTCG ACTTCCAGGA GTTCCTCTCG CTCTACAGGT CGCTCTGCGA CGGGGACGCC GCCACTCCCT CGCCCTCGCT CGACGACGAG GAGGACGAGA CTCTGCTCGA GGCCTTCCGC GTCTTCGACA AGAATATGGA CGGCTTCATC ACGGCCGAGG AGCTGCAGAC CGTACTCCTG GACCTGGGCC TGCCCGAAGG CAAGAGCCTG AAGAACTGCG AGAGAATGAT CCAGAGCGTG GACGTCGATG GCAACGGCGA AATCGACCTC AGAGAATTCA AGGAGATGAT GAGCTCCAAC TACATCTACT GCGAAGTCTG AAGGTCTCGG GCCATTCCCG GCACTTGCAG AGACTTCGCC TCGGGCTTCT GTGCCTTTGT ATACTCGACC ACAAGTTTGT GCATAGATTG GATCGTCGCT TAAATCCTGA GGACGAGGAG GATGGCAAAT CTGTAGAAAA AAACCGCATC GCACGGCCAC GGCGAAGAGA TAGAGTGAGG AGTTCACACA AGAAGCCTAG ATCCAGCCAA TTTTTCGCAT CCCACGGAGA ACTCCGACGA CGAAATTGAT CATCGACTGT AGAAACGGAG TTACACGTCT ACTTCTCCCC GACGCTCTCC GGGCGATGGT ACCCTCCCGG GGTACGAGAT TACTTTAATA ATGTCGTCTG AATCCAACTC CCTTCGGACG GATGATTCGT CTTGTCACCC CCATTGTTAC CAGCTTAGCG TGCTTTCGAG AAGTGATTTT TATGATTAAT AGTTGAAGTC AGAAGTAGAT TTCATGAGGT TCTCGAGGGG GTGAGTTTTG TGACAGTAGA ATTGATTGTA AACATTCAAC TAAATGTATG ATTAATTTCA TCATATCTCG ACTCCAACTG CCACGGTCTG CTGTCGTCAT TGGAATGAGG TGGAGAGTGG ACAGGCTCCT CAGTGTCCGG AGTTTGATAA GAATCCCACC ACTACTTTCA CTTATGAGAA TCAAGGTAGT TGGGATTCTT CTAAACATAT ATTTTTTACC TCTTGTTCTC TG |
mRNA UTR + CDS |
| >Mp6g18000.1 GGGTTTATGG TAACATGTTA GGTGGACCTC TGAGTGTTGT ATAATACATA TTTATTATAC TGTATTATAC CACGCAGTAC CCGAAGAATT CAATTATACA AATCCATAGT TTCTCCCCGA GCTTTCGGCG TTGGGCACAT TTGCTCCGTG GGGGCCGACG AAGGACGAAA GACGAGCGCT CGATCGCTGG GACTCGCGAG CTTTGCACAC CAGCTTTCTC GCTGCTGGGA GCTTCGCTGC ACGGGGCGAC GGGTCACGTG GTGGGGCTTC GACGCGTGCC AGCAGTTTCT GGGCATCTTC TCCCGTTTGG CGGAAAGGCC TGTTTCGATC GAGCTTATAT GAGCTTCCCG GGCCATGGTC ACCCCACACT TCCACACTTC CCCGTCGCAC CCGCAGCTCT CGAGCCTTCG GCACTTCGCC CTCGCCCACT CCGCTTCTCG AGCTTAATTT CTGCATGAAT CACGAATTTC GCCTAGCTTA CAATTCCCCA TCCTCGAACC GGTCTCTCGC CTTCGAATTG CCGCGCACAA TTGAATTCGA AGCACCGATC TCTCATTTAG CTGCGAATCC CATTGTAGTC GCGGTGAGCT TTATATTGCT GCGGTGCAGA TTCCGGGTCA AACGAGCGAG CCAACCGTCG GACGCGTAGC GTCGTCGGAC TCCCGAAAGT TGCAGCTTCT GCGGGTTGCA CAGATTAGAA CTTGACGGGG CAAGGGAGCG CAATTCCTTG ATTCCCTTGT ATTCTTCCCG AGGCAAGTGC CTCGGCCTCC ACAGCGGCGG AAGTCGAATT CGGAGCTGTG ACCGAGGGAG ATATGGCAGC GGTGCATTCG CAGATGGTGT TGAGCAGCGT CGGCAACATC AGCAGGCACA GCAGCAGCAG GAGCATTCAA TCGGTGCACT TCGAGGCGAC GCGATTCGCG AGCTACGCGA CCGAGGGGTG TTCGGACGAC GAGGCCACGC CGAGGAGCTA CGAATCGGGT GGTGCCAGCT CCATGACCTG GAATGCGGCG GAGATGAAGA GAGTGTTCGA AAAGGTGGAC GAGAACGACG ACGGCCTCAT ATGCGCTCAA GATCTGCTCA GATTCATGAC CCGCCTCGGA TTTCAGCTGT CGCAGGACGA GGCCGTGTCC ATGCTCGAGA GCGTGGACAG CAACGGCGAC GGGCGCGTCG ACTTCCAGGA GTTCCTCTCG CTCTACAGGT CGCTCTGCGA CGGGGACGCC GCCACTCCCT CGCCCTCGCT CGACGACGAG GAGGACGAGA CTCTGCTCGA GGCCTTCCGC GTCTTCGACA AGAATATGGA CGGCTTCATC ACGGCCGAGG AGCTGCAGAC CGTACTCCTG GACCTGGGCC TGCCCGAAGG CAAGAGCCTG AAGAACTGCG AGAGAATGAT CCAGAGCGTG GACGTCGATG GCAACGGCGA AATCGACCTC AGAGAATTCA AGGAGATGAT GAGCTCCAAC TACATCTACT GCGAAGTCTG AAGGTCTCGG GCCATTCCCG GCACTTGCAG AGACTTCGCC TCGGGCTTCT GTGCCTTTGT ATACTCGACC ACAAGTTTGT GCATAGATTG GATCGTCGCT TAAATCCTGA GGACGAGGAG GATGGCAAAT CTGTAGAAAA AAACCGCATC GCACGGCCAC GGCGAAGAGA TAGAGTGAGG AGTTCACACA AGAAGCCTAG ATCCAGCCAA TTTTTCGCAT CCCACGGAGA ACTCCGACGA CGAAATTGAT CATCGACTGT AGAAACGGAG TTACACGTCT ACTTCTCCCC GACGCTCTCC GGGCGATGGT ACCCTCCCGG GGTACGAGAT TACTTTAATA ATGTCGTCTG AATCCAACTC CCTTCGGACG GATGATTCGT CTTGTCACCC CCATTGTTAC CAGCTTAGCG TGCTTTCGAG AAGTGATTTT TATGATTAAT AGTTGAAGTC AGAAGTAGAT TTCATGAGGT TCTCGAGGGG GTGAGTTTTG TGACAGTAGA ATTGATTGTA AACATTCAAC TAAATGTATG ATTAATTTCA TCATATCTCG ACTCCAACTG CCACGGTCTG CTGTCGTCAT TGGAATGAGG TGGAGAGTGG ACAGGCTCCT CAGTGTCCGG AGTTTGATAA GAATCCCACC ACTACTTTCA CTTATGAGAA TCAAGGTAGT TGGGATTCTT CTAAACATAT ATTTTTTACC TCTTGTTCTC TG |
CDS |
| >Mp6g18000.1 ATGGCAGCGG TGCATTCGCA GATGGTGTTG AGCAGCGTCG GCAACATCAG CAGGCACAGC AGCAGCAGGA GCATTCAATC GGTGCACTTC GAGGCGACGC GATTCGCGAG CTACGCGACC GAGGGGTGTT CGGACGACGA GGCCACGCCG AGGAGCTACG AATCGGGTGG TGCCAGCTCC ATGACCTGGA ATGCGGCGGA GATGAAGAGA GTGTTCGAAA AGGTGGACGA GAACGACGAC GGCCTCATAT GCGCTCAAGA TCTGCTCAGA TTCATGACCC GCCTCGGATT TCAGCTGTCG CAGGACGAGG CCGTGTCCAT GCTCGAGAGC GTGGACAGCA ACGGCGACGG GCGCGTCGAC TTCCAGGAGT TCCTCTCGCT CTACAGGTCG CTCTGCGACG GGGACGCCGC CACTCCCTCG CCCTCGCTCG ACGACGAGGA GGACGAGACT CTGCTCGAGG CCTTCCGCGT CTTCGACAAG AATATGGACG GCTTCATCAC GGCCGAGGAG CTGCAGACCG TACTCCTGGA CCTGGGCCTG CCCGAAGGCA AGAGCCTGAA GAACTGCGAG AGAATGATCC AGAGCGTGGA CGTCGATGGC AACGGCGAAA TCGACCTCAG AGAATTCAAG GAGATGATGA GCTCCAACTA CATCTACTGC GAAGTCTGA |
Protein |
| >Mp6g18000.1 MAAVHSQMVL SSVGNISRHS SSRSIQSVHF EATRFASYAT EGCSDDEATP RSYESGGASS MTWNAAEMKR VFEKVDENDD GLICAQDLLR FMTRLGFQLS QDEAVSMLES VDSNGDGRVD FQEFLSLYRS LCDGDAATPS PSLDDEEDET LLEAFRVFDK NMDGFITAEE LQTVLLDLGL PEGKSLKNCE RMIQSVDVDG NGEIDLREFK EMMSSNYIYC EV |