Mp6g18480



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:4.10.280.10 -
FunFam G3DSA:4.10.280.10:FF:000002 Basic helix-loop-helix transcription factor
ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile.
CDD cd18919 bHLH_AtBPE_like
PANTHER PTHR12565 STEROL REGULATORY ELEMENT-BINDING PROTEIN
SMART SM00353 finulus
SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain
Pfam PF00010 Helix-loop-helix DNA-binding domain
KOG KOG1318 Helix loop helix transcription factor EB; N-term missing; [K]
MapolyID Mapoly0038s0058 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0005634 nucleus
GO GO:0046983 protein dimerization activity

Nomenclature

Gene symbol Product Transcript ID Status
MpBHLH15 transcription factor, bHLH Published

Transcript models

Transcript ID Location Sequences Extract region
Mp6g18480.1 chr6:24641106..24646449 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g18480 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g18480 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.