Mp6g18860



Description

Annotation

Database ID Description
SMART SM01114 CXC_2
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR12446 TESMIN/TSO1-RELATED
Coils Coil Coil
Pfam PF03638 Tesmin/TSO1-like CXC domain, cysteine-rich domain
ProSiteProfiles PS51634 CRC domain profile.
KEGG K21776 protein lin-54
KOG KOG1171 Metallothionein-like protein; C-term missing; [P]
MapolyID Mapoly0038s0096 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0005634 nucleus

Nomenclature

Gene symbol Product Transcript ID Status
MpCXC2 transcription factor, CXC Published

Transcript models

Transcript ID Location Sequences Extract region
Mp6g18860.1 chr6:24996835..25004236 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g18860 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g18860 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.