Mp7g03970



Description

Annotation

Database ID Description
Pfam PF08389 Exportin 1-like protein
PANTHER PTHR11223 EXPORTIN 1/5
SMART SM00913 IBN_N_2
FunFam G3DSA:1.25.10.10:FF:000022 protein EXPORTIN 1A
Pfam PF18777 Chromosome region maintenance or exportin repeat
Pfam PF18784 CRM1 / Exportin repeat 2
Pfam PF08767 CRM1 C terminal
ProSiteProfiles PS50166 Importin-beta N-terminal domain profile.
Pfam PF18787 CRM1 / Exportin repeat 3
Gene3D G3DSA:1.25.10.10 -
SUPERFAMILY SSF48371 ARM repeat
SMART SM01102 CRM1_C_2
Pfam PF03810 Importin-beta N-terminal domain
KEGG K14290 exportin-1
KOG KOG2020 Nuclear transport receptor CRM1/MSN5 (importin beta superfamily); [YU]
MapolyID Mapoly0074s0001 -
GO GO:0005634 nucleus
GO GO:0006611 protein export from nucleus
GO GO:0031267 small GTPase binding
GO GO:0000056 ribosomal small subunit export from nucleus
GO GO:0006886 intracellular protein transport
GO GO:0000055 ribosomal large subunit export from nucleus
GO GO:0005049 nuclear export signal receptor activity
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpCRM1 Exportin protein family Published

Associated Literature (AI-based literature mining, Beta-version)

Exportin protein family; Function as nuclear transport receptor; contains Importin-beta N-terminal domain; small GTPase binding (from nomenclature)

0 core 1 peripheral

Pietrykowska, H., et al. (2022) · Journal of Experimental Botany  review citation background
miRNA biogenesis/effector (Pietrykowska 2022)

Transcript models

Transcript ID Location Sequences Extract region
Mp7g03970.1 chr7:5968801..5981948 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g03970 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g03970 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.