Mp7g07380



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF04857 CAF1 family ribonuclease
Coils Coil Coil
PANTHER PTHR15092 POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1
SUPERFAMILY SSF53098 Ribonuclease H-like
Gene3D G3DSA:3.30.420.10 -
KEGG K01148 poly(A)-specific ribonuclease [EC:3.1.13.4]
KOG KOG1990 Poly(A)-specific exoribonuclease PARN; C-term missing; [L]
MapolyID Mapoly0076s0056 -
GO GO:0005737 cytoplasm
GO GO:0003723 RNA binding
GO GO:0003676 nucleic acid binding
GO GO:0000175 3'-5'-RNA exonuclease activity

Nomenclature

Gene symbol Product Transcript ID Status
MpAHG2 poly(A)-specific ribonuclease (PARN) Published

Associated Literature (AI-based literature mining, Beta-version)

Poly(A)-specific ribonuclease (AHG2 ortholog; Mapoly0076s0056); regulates the poly(A) status of mitochondrial mRNA. Citrine fusion localizes to mitochondria; conserved among land plants.

1 core 0 peripheral

Kanazawa, M., et al. (2019) · Plant & Cell Physiology  research experimental subject
Poly(A)-specific ribonuclease (AHG2 ortholog; Mapoly0076s0056); regulates the poly(A) status of mitochondrial mRNA. Citrine fusion localizes to mitochondria; conserved among land plants.

Transcript models

Transcript ID Location Sequences Extract region
Mp7g07380.1 chr7:10314382..10320206 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp7g07380.2 chr7:10314382..10320206 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g07380 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g07380 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.