Mp7g07550



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers
PANTHER PTHR46352 PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1
ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile.
FunFam G3DSA:3.30.160.60:FF:000100 Zinc finger 45-like
ProSitePatterns PS00028 Zinc finger C2H2 type domain signature.
Gene3D G3DSA:3.30.160.60 Classic Zinc Finger
SMART SM00355 c2h2final6
Pfam PF12874 Zinc-finger of C2H2 type
KOG KOG2462 C2H2-type Zn-finger protein; N-term missing; [K]
MapolyID Mapoly0076s0039 -
GO GO:0010044 response to aluminum ion
GO GO:0010447 response to acidic pH

Nomenclature

Gene symbol Product Transcript ID Status
MpIDDL4 transcription factor, IDD-related Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, IDD-related (from nomenclature)

0 core 1 peripheral

Liu, W., et al. (2024a) · Cell Reports  research experimental background
Indeterminate domain (IDD) protein gene; examined in MpANT meristem study (Fig 2B).

Transcript models

Transcript ID Location Sequences Extract region
Mp7g07550.1 chr7:10439429..10444604 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g07550 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g07550 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.