Mp7g08450
Description
Annotation
| Database | ID | Description |
|---|---|---|
| PANTHER | PTHR46031 | DOUBLE-STRANDED RNA-BINDING PROTEIN 6 |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like |
| CDD | cd19907 | DSRM_AtDRB-like_rpt1 |
| Gene3D | G3DSA:3.30.160.20 | - |
| Coils | Coil | Coil |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. |
| Pfam | PF00035 | Double-stranded RNA binding motif |
| SMART | SM00358 | DRBM_3 |
| KOG | KOG3732 | Staufen and related double-stranded-RNA-binding proteins; C-term missing; [UK] |
| KOG | KOG1467 | Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2); C-term missing; [J] |
| MapolyID | Mapoly0146s0045 | - |
| GO | GO:0003725 | double-stranded RNA binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpHYL1 | DOUBLE-STRANDED RNA-BINDING PROTEIN 1 | Published |
aka DRB1 (DSRNA-BINDING PROTEIN 1)
Associated Literature (AI-based literature mining, Beta-version)
DOUBLE-STRANDED RNA-BINDING PROTEIN 1 (from nomenclature)
0 core 1 peripheral
Pietrykowska, H., et al. (2022)
· Journal of Experimental Botany review citation background
miRNA biogenesis/effector (Pietrykowska 2022)
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp7g08450 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp7g08450.1 CAGTCCGTTA GGGTTTGGGA GAGAATTGCC GAGGCGAGCT TGGCAGTTCT GCTCTCGAGA GACGAGAGGG GAGGAGGGGG GAGGGGAGGG GAGGGCAGGG TTGGAGAGGA GAGGGGAGGG AAGGGTTCAT CATTTCGGGA ATTAGGCAAA GGGGGGTAGG GCTCGAGGTG TAGCAATTGC TTTCGTTAGG TTGACAGTTA CAAACTGCGG GTGAGTACGA AACTTTTGTC AGGTGTTGAG GTTGAGATTG AGGTTGGCAT TCTGTGGCTT GATTGCAGTA GGAGTCGTTC TTCGCGTCGA TGAGGGTTTT GTGCAGGGCT TGGGGTTGCT AGAGTTGTCG CATGCCGGCC GCGTTGTTCG TGTTCACCTC ACCAACTCGA TTGTTCTGAG AGGCAACTGA ATAGACAGAC GAGCCGCATC GTTAGGTAGA CCGCACTCTC GAATGCGACT TGCGGTTCTT CTTACACTGA GCTGTCTATT CATCTGCTTC TCTGTACAGG GTTTTTTCCG CGGAGTCGTT GGGTCTGGTC TGTGAGATGA TTATGTGACC CCAGCGCCGT GCTGCCACGA GCTCTGGCTG CGTAGACGCG ACACAGCTGC GCTCCATCGG ACCCTTGCTT TGCTTTGTTT TCTGGTTGGG CGTTGGCAGT TACAGGGTTT CTGCGGCGAG GGGTTTACGG TTCCGCGTGC AACATCCGAG CGAGGATACA GTTTGATGGT TACCGTTGCC GGACAGGTCG CCAGGAATTC TTAACTCGCG AACGAGTCGA GGACTGGAGT CCGAGGAGTC TGTCAGTCAG TCCGTCGGTC AGTCCGCCCG TCTCTAGGTG TAGGACAGGA CAGAACGCAG GAACGCCATG AGGCAGATGC ACCGAGGCTC TGATTGATGC CCGGCCATTT TGAGGGGAAT CTGCTCTCCG TCTCGTCCAG TCAGGAGGAC CAATTTTCGC ATTCGTTAGA GATTCCAGCT CCGGGCCGAG CCATGATGGG TATGAAGAAG CAAGAGAGGA GAAAAGGCTC CGTAATGCAC AAGAGCCAGC TCCAGGAGTA CGCACAGAAG GCTGCCATCC TCCCTCCCGT GTACGAATTC GTGAAAGAGG GGGCTTCTCA CGAGCCTCGG TTCAAGTGCA TCGTGATTCT CAACGGCGTG AGCTACGAGT CGCCCCCGGG GTTTCCAAAC CTGAAGTCCG CAGAGCACGC GGCCGCCAAG GTCGCGCTGG ATGCTCTGCA GCAGACGACC GATGGGACGG GGGTTTCTCC GAGTCCTGTG CATGAATCGG GCCTGTGCAA AAACTTACTG CAGGAGTATG CGCAGAAAAA TAGCTTACCG CTGCCTGTGT ACCAATCGAC CAGGGCAGGC GAAGATCATG CGCCTACTTT CACTTCGAGT GTGGAGATTG CCGGGGTAAA ATACAGCGGT GGCTCGGCTA AAAACAAGAA GGAAGCTGAG ATCAAAGCTG CGAAGACTGC ACTGCTTGCA ATCCAGTCCG CATTAGCTTC AACGGTAGAA GCTGAAGTTC CTGTTGTATC TCCTGCTAAA CCTCAAGTGG GTCTCTCGAC TTTTATTGAC TCTCAGATAA ACAATACCGG CCGAAAGCGA GGACGAGGAG CTCAAGCTTC AGCCGAGGAT AACACGGCCC GTCGTTTGAA GATGGAGGAA ACGCCCGCCG GGGTCAAGAC TTCCTCGGAA ACCCCGGTTC TCGCCACCCC TGCAAAGATG GAAACGGACG ATTCTGCGCA AGTGATCGCT TCCACGACGA AGGTAGGTTA CTTTCTCTGT TTGAAGTGGC CGGGTGTTGC TGTGTGTAGA CAGCGAAGGG AAGTTTGATG CCTGCGATTC CGTGCTGCAT TTGGTGGGCT GGCGTTGACA GGACAGAGAG CTGCAGGGAT AGCATCTCGA GTGTCTTCGT GAGGACTTGA TCATTCTAAC ACAACTACTA TTGTACAATG TTTTTGCTTA CCTCCATTTG TTATTGTTCC ACAGCCGATG AAGTCCGCGA AGAAGAAAGC AGAGAGAGCT CTTCTAAAGG AAGCAGCAGC GCTGGAAGCG ACCAACAAGG AAGCCGAATC TGGCGGAAAA GCTTCAGCTG CCACTCTGGT GACGAAAAGT GTGGCCATAG CAGATTTGCT TGCCACTCCT ACAGCTCAAA AGATTCTCGG TGTACTTTAG AAATTGGAAC ATGAACTGAT TGGTCAACGT CCCTTCTAGA AGTTCGTGTC GCATGTAGAT GGAATGGAGT GCTTACAACC AACCGGGTCC TCACGATCGA TTGATTGCGA GTTCCCCGCG AGTGGTGTGG AGTTTCTGGT GTCTATCAAG AACCGAAAAG GGGAGTCCAC ACTCGATACA ATCATGCTTG AGACTGGACA GAATGTTCCA GTAATTGGAT CTCGTCGACT TATCGTCACA GATTACCGTA TTCTGTCCAT TTACGCAACT GCCAGGAGCG AAGGTCCAGG TTGTCCATAA TGACTCATGC TAAGCTCTTA GTGATCAGTT TGTGACAGTG TCTGCTGATT CTGATCGGCC TCGAAAATTT TGCCGCCCTA GATCTCTTGT AGGCTGCATT GGACGGCAGT GCATTTGCAA GGGTTAGAGT TAGTTGAAAG TGTTTTACGA AACCTCTGTG TAAACATCTA TTTAGTTATA CTTCGTACGT CGAGAGTGGG TACATATAAT CTTAAACTGT CTACCGCACC ATGTGTACTT CTCTGGTATG TCTTTGAGTG GCAGTAAAGG TAGTTGAGCT TTCAGCTGAC AAGGATGTCC CACTTGAC |
mRNA UTR + CDS |
| >Mp7g08450.1 CAGTCCGTTA GGGTTTGGGA GAGAATTGCC GAGGCGAGCT TGGCAGTTCT GCTCTCGAGA GACGAGAGGG GAGGAGGGGG GAGGGGAGGG GAGGGCAGGG TTGGAGAGGA GAGGGGAGGG AAGGGTTCAT CATTTCGGGA ATTAGGCAAA GGGGGGTAGG GCTCGAGGTG TAGCAATTGC TTTCGTTAGG TTGACAGTTA CAAACTGCGG GGTTTTTTCC GCGGAGTCGT TGGGTCTGGT CTGTGAGATG ATTATGTGAC CCCAGCGCCG TGCTGCCACG AGCTCTGGCT GCGTAGACGC GACACAGCTG CGCTCCATCG GACCCTTGCT TTGCTTTGTT TTCTGGTTGG GCGTTGGCAG TTACAGGGTT TCTGCGGCGA GGGGTTTACG GTTCCGCGTG CAACATCCGA GCGAGGATAC AGTTTGATGG TTACCGTTGC CGGACAGGTC GCCAGGAATT CTTAACTCGC GAACGAGTCG AGGACTGGAG TCCGAGGAGT CTGTCAGTCA GTCCGTCGGT CAGTCCGCCC GTCTCTAGGT GTAGGACAGG ACAGAACGCA GGAACGCCAT GAGGCAGATG CACCGAGGCT CTGATTGATG CCCGGCCATT TTGAGGGGAA TCTGCTCTCC GTCTCGTCCA GTCAGGAGGA CCAATTTTCG CATTCGTTAG AGATTCCAGC TCCGGGCCGA GCCATGATGG GTATGAAGAA GCAAGAGAGG AGAAAAGGCT CCGTAATGCA CAAGAGCCAG CTCCAGGAGT ACGCACAGAA GGCTGCCATC CTCCCTCCCG TGTACGAATT CGTGAAAGAG GGGGCTTCTC ACGAGCCTCG GTTCAAGTGC ATCGTGATTC TCAACGGCGT GAGCTACGAG TCGCCCCCGG GGTTTCCAAA CCTGAAGTCC GCAGAGCACG CGGCCGCCAA GGTCGCGCTG GATGCTCTGC AGCAGACGAC CGATGGGACG GGGGTTTCTC CGAGTCCTGT GCATGAATCG GGCCTGTGCA AAAACTTACT GCAGGAGTAT GCGCAGAAAA ATAGCTTACC GCTGCCTGTG TACCAATCGA CCAGGGCAGG CGAAGATCAT GCGCCTACTT TCACTTCGAG TGTGGAGATT GCCGGGGTAA AATACAGCGG TGGCTCGGCT AAAAACAAGA AGGAAGCTGA GATCAAAGCT GCGAAGACTG CACTGCTTGC AATCCAGTCC GCATTAGCTT CAACGGTAGA AGCTGAAGTT CCTGTTGTAT CTCCTGCTAA ACCTCAAGTG GGTCTCTCGA CTTTTATTGA CTCTCAGATA AACAATACCG GCCGAAAGCG AGGACGAGGA GCTCAAGCTT CAGCCGAGGA TAACACGGCC CGTCGTTTGA AGATGGAGGA AACGCCCGCC GGGGTCAAGA CTTCCTCGGA AACCCCGGTT CTCGCCACCC CTGCAAAGAT GGAAACGGAC GATTCTGCGC AAGTGATCGC TTCCACGACG AAGCCGATGA AGTCCGCGAA GAAGAAAGCA GAGAGAGCTC TTCTAAAGGA AGCAGCAGCG CTGGAAGCGA CCAACAAGGA AGCCGAATCT GGCGGAAAAG CTTCAGCTGC CACTCTGGTG ACGAAAAGTG TGGCCATAGC AGATTTGCTT GCCACTCCTA CAGCTCAAAA GATTCTCGGT GTACTTTAGA AATTGGAACA TGAACTGATT GGTCAACGTC CCTTCTAGAA GTTCGTGTCG CATGTAGATG GAATGGAGTG CTTACAACCA ACCGGGTCCT CACGATCGAT TGATTGCGAG TTCCCCGCGA GTGGTGTGGA GTTTCTGGTG TCTATCAAGA ACCGAAAAGG GGAGTCCACA CTCGATACAA TCATGCTTGA GACTGGACAG AATGTTCCAG TAATTGGATC TCGTCGACTT ATCGTCACAG ATTACCGTAT TCTGTCCATT TACGCAACTG CCAGGAGCGA AGGTCCAGGT TGTCCATAAT GACTCATGCT AAGCTCTTAG TGATCAGTTT GTGACAGTGT CTGCTGATTC TGATCGGCCT CGAAAATTTT GCCGCCCTAG ATCTCTTGTA GGCTGCATTG GACGGCAGTG CATTTGCAAG GGTTAGAGTT AGTTGAAAGT GTTTTACGAA ACCTCTGTGT AAACATCTAT TTAGTTATAC TTCGTACGTC GAGAGTGGGT ACATATAATC TTAAACTGTC TACCGCACCA TGTGTACTTC TCTGGTATGT CTTTGAGTGG CAGTAAAGGT AGTTGAGCTT TCAGCTGACA AGGATGTCCC ACTTGAC |
CDS |
| >Mp7g08450.1 ATGCCCGGCC ATTTTGAGGG GAATCTGCTC TCCGTCTCGT CCAGTCAGGA GGACCAATTT TCGCATTCGT TAGAGATTCC AGCTCCGGGC CGAGCCATGA TGGGTATGAA GAAGCAAGAG AGGAGAAAAG GCTCCGTAAT GCACAAGAGC CAGCTCCAGG AGTACGCACA GAAGGCTGCC ATCCTCCCTC CCGTGTACGA ATTCGTGAAA GAGGGGGCTT CTCACGAGCC TCGGTTCAAG TGCATCGTGA TTCTCAACGG CGTGAGCTAC GAGTCGCCCC CGGGGTTTCC AAACCTGAAG TCCGCAGAGC ACGCGGCCGC CAAGGTCGCG CTGGATGCTC TGCAGCAGAC GACCGATGGG ACGGGGGTTT CTCCGAGTCC TGTGCATGAA TCGGGCCTGT GCAAAAACTT ACTGCAGGAG TATGCGCAGA AAAATAGCTT ACCGCTGCCT GTGTACCAAT CGACCAGGGC AGGCGAAGAT CATGCGCCTA CTTTCACTTC GAGTGTGGAG ATTGCCGGGG TAAAATACAG CGGTGGCTCG GCTAAAAACA AGAAGGAAGC TGAGATCAAA GCTGCGAAGA CTGCACTGCT TGCAATCCAG TCCGCATTAG CTTCAACGGT AGAAGCTGAA GTTCCTGTTG TATCTCCTGC TAAACCTCAA GTGGGTCTCT CGACTTTTAT TGACTCTCAG ATAAACAATA CCGGCCGAAA GCGAGGACGA GGAGCTCAAG CTTCAGCCGA GGATAACACG GCCCGTCGTT TGAAGATGGA GGAAACGCCC GCCGGGGTCA AGACTTCCTC GGAAACCCCG GTTCTCGCCA CCCCTGCAAA GATGGAAACG GACGATTCTG CGCAAGTGAT CGCTTCCACG ACGAAGCCGA TGAAGTCCGC GAAGAAGAAA GCAGAGAGAG CTCTTCTAAA GGAAGCAGCA GCGCTGGAAG CGACCAACAA GGAAGCCGAA TCTGGCGGAA AAGCTTCAGC TGCCACTCTG GTGACGAAAA GTGTGGCCAT AGCAGATTTG CTTGCCACTC CTACAGCTCA AAAGATTCTC GGTGTACTTT AG |
Protein |
| >Mp7g08450.1 MPGHFEGNLL SVSSSQEDQF SHSLEIPAPG RAMMGMKKQE RRKGSVMHKS QLQEYAQKAA ILPPVYEFVK EGASHEPRFK CIVILNGVSY ESPPGFPNLK SAEHAAAKVA LDALQQTTDG TGVSPSPVHE SGLCKNLLQE YAQKNSLPLP VYQSTRAGED HAPTFTSSVE IAGVKYSGGS AKNKKEAEIK AAKTALLAIQ SALASTVEAE VPVVSPAKPQ VGLSTFIDSQ INNTGRKRGR GAQASAEDNT ARRLKMEETP AGVKTSSETP VLATPAKMET DDSAQVIAST TKPMKSAKKK AERALLKEAA ALEATNKEAE SGGKASAATL VTKSVAIADL LATPTAQKIL GVL |