Mp7g09040



Description

Annotation

Database ID Description
CDD cd16508 RING-HC_HAKAI-like
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR13480 E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED
ProSitePatterns PS00518 Zinc finger RING-type signature.
ProSitePatterns PS00028 Zinc finger C2H2 type domain signature.
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile.
KEGG K15685 E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
KOG KOG2932 E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex; C-term missing; [O]
MapolyID Mapoly0068s0057 -
GO GO:0030155 regulation of cell adhesion
GO GO:0061630 ubiquitin protein ligase activity
GO GO:0016567 protein ubiquitination

Nomenclature

Gene symbol Product Transcript ID Status
MpHAKAI E3 ubiquitin-protein ligase; RING/U-box superfamily protein Published

Transcript models

Transcript ID Location Sequences Extract region
Mp7g09040.1 chr7:11933568..11939642 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g09040 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g09040 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.