Mp7g11330



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00249 Myb-like DNA-binding domain
SUPERFAMILY SSF46689 Homeodomain-like
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
FunFam G3DSA:1.10.10.60:FF:000002 Myb family transcription factor
PANTHER PTHR31499 MYB FAMILY TRANSCRIPTION FACTOR PHL11
Coils Coil Coil
Pfam PF14379 MYB-CC type transfactor, LHEQLE motif
NCBIfam TIGR01557 myb-like DNA-binding domain, SHAQKYF class
KOG KOG1984 Vesicle coat complex COPII, subunit SFB3; C-term missing; [U]
MapolyID Mapoly0003s0147 -
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpGARP5 transcription factor, GARP Published

Associated Literature (AI-based literature mining, Beta-version)

Central PHR-family MYB-CC transcription factor for internal Pi sensing. Up-regulated under low Pi at all time points and confirmed by qPCR; P1BS motif enrichment analysis was centered on its predicted targets, supporting a conserved PHR1-driven Pi starvation response.

1 core 0 peripheral

Rico-Reséndiz, F., et al. (2020) · International Journal of Molecular Sciences  research experimental subject
Central PHR-family MYB-CC transcription factor for internal Pi sensing. Up-regulated under low Pi at all time points and confirmed by qPCR; P1BS motif enrichment analysis was centered on its predicted targets, supporting a conserved PHR1-driven Pi starvation response.

Transcript models

Transcript ID Location Sequences Extract region
Mp7g11330.1 chr7:14498731..14505608 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g11330 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g11330 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.