Mp7g12900



Description

Annotation

Database ID Description
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile.
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF12854 PPR repeat
ProSiteProfiles PS50158 Zinc finger CCHC-type profile.
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains
Pfam PF13041 PPR repeat family
NCBIfam TIGR00756 pentatricopeptide repeat
PANTHER PTHR47931 OS01G0228400 PROTEIN
Pfam PF01535 PPR repeat
KEGG K17710 pentatricopeptide repeat domain-containing protein 1
KOG KOG4422 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
KOG KOG4318 Bicoid mRNA stability factor; C-term missing; [A]
KOG KOG0199 ACK and related non-receptor tyrosine kinases; N-term missing; [T]
MapolyID Mapoly0003s0298 -
GO GO:0003676 nucleic acid binding
GO GO:0005515 protein binding
GO GO:0008270 zinc ion binding

Nomenclature

Gene symbol Product Transcript ID Status
MpPPR_8 Pentatricopeptide repeat proteins Published

Transcript models

Transcript ID Location Sequences Extract region
Mp7g12900.1 chr7:16138480..16143039 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp7g12900.2 chr7:16138480..16143039 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g12900 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g12900 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.