Mp7g14650



Description

Annotation

Database ID Description
Gene3D G3DSA:3.90.226.10 -
PANTHER PTHR22855 ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED
SUPERFAMILY SSF52096 ClpP/crotonase
ProSiteProfiles PS50989 Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile.
Pfam PF01039 Carboxyl transferase domain
FunFam G3DSA:3.90.226.10:FF:000004 Methylcrotonoyl-CoA carboxylase beta chain
ProSiteProfiles PS50980 Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile.
FunFam G3DSA:3.90.226.10:FF:000007 Methylcrotonoyl-CoA carboxylase subunit beta
KEGG K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
KOG KOG0540 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta; [EI]
MapolyID Mapoly0009s0150 -
GO GO:0005739 mitochondrion
GO GO:1905202 methylcrotonoyl-CoA carboxylase complex
GO GO:0016874 ligase activity
GO GO:0004485 methylcrotonoyl-CoA carboxylase activity
GO GO:0006552 L-leucine catabolic process

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

3-methylcrotonyl-CoA carboxylase; listed in Table 1 as a candidate MpKAN-regulated DEG.

0 core 1 peripheral

Briginshaw, L. N., et al. (2022) · New Phytologist  research experimental background
3-methylcrotonyl-CoA carboxylase; listed in Table 1 as a candidate MpKAN-regulated DEG.

Transcript models

Transcript ID Location Sequences Extract region
Mp7g14650.1 chr7:18379479..18385993 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g14650 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g14650 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.