Mp7g16380



Description

Annotation

Database ID Description
Gene3D G3DSA:3.30.160.20 -
CDD cd19869 DSRM_DCL_plant
SUPERFAMILY SSF54768 dsRNA-binding domain-like
CDD cd00593 RIBOc
PANTHER PTHR14950 DICER-RELATED
Pfam PF00636 Ribonuclease III domain
FunFam G3DSA:1.10.1520.10:FF:000004 Endoribonuclease dicer-like 1
Gene3D G3DSA:1.10.1520.10 Ribonuclease III domain
SMART SM00358 DRBM_3
SUPERFAMILY SSF69065 RNase III domain-like
Pfam PF14709 double strand RNA binding domain from DEAD END PROTEIN 1
Hamap MF_00104 Ribonuclease 3 [rnc].
SMART SM00535 riboneu5
ProSiteProfiles PS50142 Ribonuclease III family domain profile.
ProSitePatterns PS00517 Ribonuclease III family signature.
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile.
ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile.
Pfam PF00035 Double-stranded RNA binding motif
KOG KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases; N-term missing; [A]
MapolyID Mapoly0123s0020 -
GO GO:0005634 nucleus
GO GO:0003723 RNA binding
GO GO:0006364 rRNA processing
GO GO:0006396 RNA processing
GO GO:0030422 siRNA processing
GO GO:0004525 ribonuclease III activity
GO GO:0005737 cytoplasm

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Ribonuclease III (rnc/DROSHA/RNT1); listed in Table 1 among MpKAN-responsive DEGs.

0 core 2 peripheral

Csicsely, E., et al. (2025) · The Plant Journal  research sequence comparator
Candidate DCL homolog of a possible new class; excluded (lacks PAZ domain).
Briginshaw, L. N., et al. (2022) · New Phytologist  research experimental background
Ribonuclease III (rnc/DROSHA/RNT1); listed in Table 1 among MpKAN-responsive DEGs.

Transcript models

Transcript ID Location Sequences Extract region
Mp7g16380.1 chr7:20384236..20388449 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp7g16380.2 chr7:20383725..20388487 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g16380 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g16380 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.