Mp7g17410



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00667 Lish
Gene3D G3DSA:2.130.10.10 -
Pfam PF21359 TOPLESS, zinc finger domain
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
SMART SM00668 ctlh
ProSiteProfiles PS50896 LIS1 homology (LisH) motif profile.
PANTHER PTHR44083 TOPLESS-RELATED PROTEIN 1-RELATED
FunFam G3DSA:2.130.10.10:FF:000479 Topless-related protein 3
SUPERFAMILY SSF50998 Quinoprotein alcohol dehydrogenase-like
SMART SM00320 WD40_4
Pfam PF00400 WD domain, G-beta repeat
CDD cd00200 WD40
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
ProSiteProfiles PS50897 C-terminal to LisH (CTLH) motif profile.
SUPERFAMILY SSF50978 WD40 repeat-like
FunFam G3DSA:2.130.10.10:FF:000558 Topless-related protein 1
KOG KOG0266 WD40 repeat-containing protein; [R]
KOG KOG0274 Cdc4 and related F-box and WD-40 proteins; N-term missing; [R]
KOG KOG0293 WD40 repeat-containing protein; C-term missing; [S]
KOG KOG3671 Actin regulatory protein (Wiskott-Aldrich syndrome protein); N-term missing; [TZ]
MapolyID Mapoly0051s0078 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpTPL Protein binding Published

Associated Literature (AI-based literature mining, Beta-version)

Protein binding; Genome paper Mapoly0051s0078 (from nomenclature)

0 core 5 peripheral

Kato H, Ishizaki K, Kouno M, Shirakawa M, Bowman JL, Nishihama R, Kohchi T. (2015) · PLoS Genet  research citation background
TOPLESS (TPL) co-repressor homolog cited as the likely partner recruited by the MpIAA domain-I (EAR-like) motif in auxin-mediated transcriptional repression; not directly assayed in this paper.
Suzuki, H., et al. (2023) · Plant Cell  research citation background
MpTPL (MpTOPLESS) cited as the co-repressor recruited to MpARFs, causing auxin-insensitive cell-mass formation.
Naramoto, S., et al. (2022) · The Plant Cell  research citation background
Review: TOPLESS co-repressor; overexpression inhibits gemma cup formation.
Flores-Sandoval, E., et al. (2018a) · New Phytologist  research experimental comparator
TOPLESS corepressor; ARF repression context.
Kato, H., et al. (2020a) · Nature Plants  research experimental comparator
TOPLESS co-repressor recruited by ARFs/IAA.

Transcript models

Transcript ID Location Sequences Extract region
Mp7g17410.1 chr7:21721555..21732111 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp7g17410 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp7g17410 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.