Mp8g00880



Description

Annotation

Database ID Description
Gene3D G3DSA:1.20.5.110 -
ProSiteProfiles PS50892 v-SNARE coiled-coil homology domain profile.
CDD cd15843 R-SNARE
SMART SM01270 Longin_2
Gene3D G3DSA:3.30.450.50 Longin domain
SUPERFAMILY SSF58038 SNARE fusion complex
Pfam PF00957 Synaptobrevin
PANTHER PTHR21136 SNARE PROTEINS
CDD cd14824 Longin
ProSitePatterns PS00417 Synaptobrevin signature.
Pfam PF13774 Regulated-SNARE-like domain
PRINTS PR00219 Synaptobrevin signature
FunFam G3DSA:3.30.450.50:FF:000011 Vesicle-associated membrane protein 714
ProSiteProfiles PS50859 Longin domain profile.
FunFam G3DSA:1.20.5.110:FF:000004 Vesicle-associated membrane protein 7
SUPERFAMILY SSF64356 SNARE-like
KEGG K08515 vesicle-associated membrane protein 7
KOG KOG0859 Synaptobrevin/VAMP-like protein; [U]
MapolyID Mapoly0064s0109 -
GO GO:0016192 vesicle-mediated transport
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpVAMP71 Ortholog of Arabidopsis VAMP7 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis VAMP7 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpVAMP71 driven by the cauliflower mosaic virus 35S promoter is localized to punctate compartments and the vacuolar membrane. (from nomenclature)

2 core 5 peripheral

Minamino, N., et al. (2022) · Development  research experimental subject
R-SNARE (VAMP71); mCitrine-tagged to track endomembrane remodeling during spermiogenesis in M. polymorpha.
Minamino, N., et al. (2017) · Journal of Plant Research  research experimental subject
Vacuolar R-SNARE; during spermatogenesis it localizes to spherical endomembrane structures, marking dynamic reorganization of the endomembrane system in spermatids.
Aggarwal, B., et al. (2024) · RNA Biology  research citation background
Cited from prior work as an example M. polymorpha miRNA-target module (MpmiR11670.1-Mp8g00880).
Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Kanazawa, T., et al. (2016) · Plant and Cell Physiology  research sequence comparator
VAMP71 R-SNARE; SNARE family inventory.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g00880.1 chr8:1091181..1094602 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g00880 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g00880 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.