Mp8g00970



Description

Annotation

Database ID Description
Pfam PF09737 De-etiolated protein 1 Det1
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR13374 DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG
KEGG K10571 de-etiolated-1
KOG KOG2558 Negative regulator of histones; N-term missing; [K]
KOG KOG2558 Negative regulator of histones; C-term missing; [K]
MapolyID Mapoly0064s0101 -
GO GO:0005634 nucleus
GO GO:0031461 cullin-RING ubiquitin ligase complex
GO GO:0016567 protein ubiquitination
GO GO:0031625 ubiquitin protein ligase binding
GO GO:1990756 ubiquitin-like ligase-substrate adaptor activity
GO GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process

Nomenclature

Gene symbol Product Transcript ID Status
MpDET1 A subunit of CDD complex Published

Associated Literature (AI-based literature mining, Beta-version)

DE-ETIOLATED1 (Mp8g00970); plays a role in the circadian clock of M. polymorpha. Mpdet1 alters clock-output gene rhythms; itself a rhythmically expressed clock-associated gene.

1 core 1 peripheral

Lagercrantz, U., et al. (2021) · New Phytologist  research experimental subject
DE-ETIOLATED1 (Mp8g00970); plays a role in the circadian clock of M. polymorpha. Mpdet1 alters clock-output gene rhythms; itself a rhythmically expressed clock-associated gene.
Clayton, W. A., et al. (2018) · Plant Journal  research experimental background
UVB-induced DET1 (DE-ETIOLATED-1), photomorphogenic component (annotation).

Transcript models

Transcript ID Location Sequences Extract region
Mp8g00970.1 chr8:1158923..1165813 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g00970 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g00970 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.