Mp8g01670



Description

Annotation

Database ID Description
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
PRINTS PR00320 G protein beta WD-40 repeat signature
PANTHER PTHR44111 ELONGATOR COMPLEX PROTEIN 2
Gene3D G3DSA:2.130.10.10 -
Pfam PF00400 WD domain, G-beta repeat
SUPERFAMILY SSF50978 WD40 repeat-like
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
SMART SM00320 WD40_4
FunFam G3DSA:2.130.10.10:FF:000400 Elongator acetyltransferase complex subunit 2
KEGG K11374 elongator complex protein 2
KOG KOG1063 RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily; [BK]
MapolyID Mapoly0064s0032 -
GO GO:0033588 elongator holoenzyme complex
GO GO:0002098 tRNA wobble uridine modification
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpELP2 elongator protein 2 Published

Transcript models

Transcript ID Location Sequences Extract region
Mp8g01670.1 chr8:1798389..1803818 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g01670 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g01670 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.