Mp8g01780



Description

Annotation

Database ID Description
ProSiteProfiles PS50293 TPR repeat region circular profile.
Pfam PF00515 Tetratricopeptide repeat
ProSiteProfiles PS50005 TPR repeat profile.
PANTHER PTHR10130 PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5
SUPERFAMILY SSF48452 TPR-like
Pfam PF13432 Tetratricopeptide repeat
SMART SM00028 tpr_5
FunFam G3DSA:1.25.40.10:FF:000110 Peroxisome biogenesis protein 5
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
KEGG K13342 peroxin-5
KOG KOG1125 TPR repeat-containing protein; [R]
MapolyID Mapoly0064s0022 -
GO GO:0005052 peroxisome matrix targeting signal-1 binding
GO GO:0016560 protein import into peroxisome matrix, docking
GO GO:0005515 protein binding
GO GO:0005778 peroxisomal membrane
GO GO:0005829 cytosol

Nomenclature

Gene symbol Product Transcript ID Status
MpPEX5 PEX5, Receptor for PTS1 proteins Published

Associated Literature (AI-based literature mining, Beta-version)

PEX5, Receptor for PTS1 proteins; Receptor for PTS1 proteins (from nomenclature)

0 core 1 peripheral

Goto-Yamada, S., et al. (2022) · Frontiers in Cell and Developmental Biology  review citation background
M. polymorpha PEX5 (peroxin/peroxisome biogenesis)

Transcript models

Transcript ID Location Sequences Extract region
Mp8g01780.1 chr8:1894499..1902128 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g01780.2 chr8:1893315..1902128 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g01780.3 chr8:1894499..1902128 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g01780 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g01780 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.