Mp8g02180



Description

Annotation

Database ID Description
Coils Coil Coil
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:1.10.246.20:FF:000003 Mediator of RNA polymerase II transcription subunit 15a
PANTHER PTHR33137 MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED
SUPERFAMILY SSF47040 Kix domain of CBP (creb binding protein)
Gene3D G3DSA:1.10.246.20 Coactivator CBP, KIX domain
Pfam PF16987 KIX domain
KOG KOG3655 Drebrins and related actin binding proteins; N-term missing; [Z]
KOG KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily); N-term missing; C-term missing; [A]
MapolyID Mapoly0012s0015 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003713 transcription coactivator activity
GO GO:0003712 transcription coregulator activity
GO GO:0031490 chromatin DNA binding

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Identified as the single full-length MED15 gene in M. polymorpha; its KIX domain interacted with MpDELLA's N-terminus by Y2H/BiFC and coexpression in luciferase assays further boosted MpMYB14/MpDELLA-dependent MpPAL activation, supporting conserved Mediator recruitment.

1 core 0 peripheral

Hernández-García, J., et al. (2024b) · Proceeding of the National Academy of Sciences USA  research experimental subject
Identified as the single full-length MED15 gene in M. polymorpha; its KIX domain interacted with MpDELLA's N-terminus by Y2H/BiFC and coexpression in luciferase assays further boosted MpMYB14/MpDELLA-dependent MpPAL activation, supporting conserved Mediator recruitment.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g02180.1 chr8:2341016..2352950 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g02180.2 chr8:2341016..2353125 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g02180.3 chr8:2341016..2353094 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g02180.4 chr8:2341016..2353094 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g02180.5 chr8:2341016..2353094 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g02180 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g02180 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.