Mp8g02960
Description
Annotation
| Database | ID | Description |
|---|---|---|
| NCBIfam | TIGR00174 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA |
| Pfam | PF01715 | IPP transferase |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases |
| Gene3D | G3DSA:1.10.20.140 | - |
| Hamap | MF_00185 | tRNA dimethylallyltransferase [miaA]. |
| Gene3D | G3DSA:3.40.50.300 | - |
| PANTHER | PTHR11088 | TRNA DIMETHYLALLYLTRANSFERASE |
| CDD | cd02019 | NK |
| KEGG | K00791 | tRNA dimethylallyltransferase [EC:2.5.1.75] |
| KOG | KOG1384 | tRNA delta(2)-isopentenylpyrophosphate transferase; [J] |
| MapolyID | Mapoly0012s0089 | - |
| GO | GO:0052381 | tRNA dimethylallyltransferase activity |
| GO | GO:0008033 | tRNA processing |
| GO | GO:0006400 | tRNA modification |
| GO | GO:0009691 | cytokinin biosynthetic process |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpIPT2 | Hormone related protein, cytokinin related protein, cytokinin related protein biosynthesis | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
Hormone related protein, cytokinin related protein, cytokinin related protein biosynthesis (from nomenclature)
0 core 3 peripheral
Aki, S. S., et al. (2022)
· Scientific Reports research sequence background
Cytokinin biosynthesis gene orthologous to Arabidopsis IPT9; downregulated under MpRRB-mediated signaling and not upregulated by MpGCAM1 overexpression.
Briginshaw, L. N., et al. (2022)
· New Phytologist research experimental background
Cytokinin biosynthesis gene; FR-upregulated in wild-type males and females in the transcriptome analysis.
Sun, R., et al. (2023)
· Plant Cell research experimental background
DEG: cytokinin biosynthesis gene (ISOPENTENYLTRANSFERASE2) down-regulated in Mp_cps-4ld.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp8g02960 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp8g02960.1 ACATGAGCAC AACAGACAAC TCTGGAGCTT GCCTGCAAAA TACTCTGCAA ACTTTGTGAT CCAGTCTAAG AGCGAGGGGG GTCTGAGTGA GAATATACGA ACAGCAAACA AAAAGCGTAG ATTGTTCCCT TTGGTCTCAT TGTGTCGTGA GAGTGAGCCA GGCAGCCAGC CAGCAAGCCA GGCAGCCAGC AGGCCAGCCA GCAGGCCAGC CAGTCAACCT GCAGCGGACG CGCAAATCAG CCCCGCAGAC AGACGAAAGA GAGCGAGCCT GAGAGAGCGA GCAGCGATGA TGCTGGGCGG GCACGCGCAT TGTGCAATGA GGCCGACGAT CAGAGCCACG GCGGCGGAGA ATTCGAATTC GTCCAAGGGG CGGGTGATTG TCATCACGGG GCCTACTGCA GTGGGTAAGA GCTCGGCCGC CATTTCTCTG GCTCAGCGCT TGAATGGCGA GATCATCAGC GCGGATTCAG TGCAGATTTA TAAAGGCCTC GATGTCGGCA GCGCCAAAAT TCCCTGGAGG GAGCGCCAGA ATGTGCCTCA TCACCTTCTG GACATCGTCC ACCCGACCGA GGAATACAGT GCGCAGGATT TCTACGTAGA TGCCAAGGCG GCTACAGACA TGGTGCTCGC CAAGGGCCGG GTCCCAATTG TGGTCGGCGG CAGTGGACTT TACATCCGCT GGTTTCTGAA TGGCAAGCTC GGCAGCCCCA AGCCCACTGA GGAGCAAGCC GCAGCTGTCG ATGCCGTGGT CACTCTCCTT CAGAATGCCA GAGCCGGGTG GGACGACGCG GTGAAGTATC TGTCTCGAGC CGGGGATCCT GACACTGCAC GCAGACTGGC ACGAGGCGAC TGGAACAACC TTCGGCGAGC TCTGGAAGTC ATTGAGATCA CCTACCGGCC GCAGACCTCG CTTCCGTCGC CCTTGTTCAG TGCCACCGGG TGCTCCAATG CTCCTCAGCT CGACTACGAC TTCCAGTGCT ACTTCCTGTA TAGAGAGCGC ATGGACCTGT ACCGACGCAT CGATCAACGA TGCGAGGAAA TGCTCACGGA CCTCTACGGG CAAGGATTAA TGAAGGAAGC CATGTGGCTC CTGGAATTAG GAATTTTGCC CAACTCCAGC TCACCTTCTA AAGCTATCGG GTACAGCCAA GCCATGGAGT TCCTGCTTGC ATGCAGGAAA TCAAGAGGTG TGACCTCCGT TCCCCAATTC TTGAATTTTG TCCAAGAGTT CCAAAGAGCA TCGAGAAATT ATGCTGAGCG ACAACTGGCA TGGTTCCGAG GCGAAGATAT ATTCCACTGG GTCGACGGAT CGATCCCCGA GAATGTAGTG GATATTATGG AGCGAGAGTA CCACACCACG TCCAATGGAG CGGCGGTATC TCGGTCTTTG GAAAGCAAGG CAAGGATGTG CCACAAACTA AAACCTCTCA ACACTTATGC AGCCCGAAAC ACAATATTCA CAAAGCCTTC AGCTTGTGCC AGCATCCTCC ACTGGATCGA GAAGACTCAA GGCGGCGTTG AACTTCTGGT CTGAATCGCA GATGCCAGAG TTGTGATTTT GTAATTCCTA TATGTACATA AACTTCACAC GCACACTTCT TTGTGCATTG AC |
mRNA UTR + CDS |
| >Mp8g02960.1 ACATGAGCAC AACAGACAAC TCTGGAGCTT GCCTGCAAAA TACTCTGCAA ACTTTGTGAT CCAGTCTAAG AGCGAGGGGG GTCTGAGTGA GAATATACGA ACAGCAAACA AAAAGCGTAG ATTGTTCCCT TTGGTCTCAT TGTGTCGTGA GAGTGAGCCA GGCAGCCAGC CAGCAAGCCA GGCAGCCAGC AGGCCAGCCA GCAGGCCAGC CAGTCAACCT GCAGCGGACG CGCAAATCAG CCCCGCAGAC AGACGAAAGA GAGCGAGCCT GAGAGAGCGA GCAGCGATGA TGCTGGGCGG GCACGCGCAT TGTGCAATGA GGCCGACGAT CAGAGCCACG GCGGCGGAGA ATTCGAATTC GTCCAAGGGG CGGGTGATTG TCATCACGGG GCCTACTGCA GTGGGTAAGA GCTCGGCCGC CATTTCTCTG GCTCAGCGCT TGAATGGCGA GATCATCAGC GCGGATTCAG TGCAGATTTA TAAAGGCCTC GATGTCGGCA GCGCCAAAAT TCCCTGGAGG GAGCGCCAGA ATGTGCCTCA TCACCTTCTG GACATCGTCC ACCCGACCGA GGAATACAGT GCGCAGGATT TCTACGTAGA TGCCAAGGCG GCTACAGACA TGGTGCTCGC CAAGGGCCGG GTCCCAATTG TGGTCGGCGG CAGTGGACTT TACATCCGCT GGTTTCTGAA TGGCAAGCTC GGCAGCCCCA AGCCCACTGA GGAGCAAGCC GCAGCTGTCG ATGCCGTGGT CACTCTCCTT CAGAATGCCA GAGCCGGGTG GGACGACGCG GTGAAGTATC TGTCTCGAGC CGGGGATCCT GACACTGCAC GCAGACTGGC ACGAGGCGAC TGGAACAACC TTCGGCGAGC TCTGGAAGTC ATTGAGATCA CCTACCGGCC GCAGACCTCG CTTCCGTCGC CCTTGTTCAG TGCCACCGGG TGCTCCAATG CTCCTCAGCT CGACTACGAC TTCCAGTGCT ACTTCCTGTA TAGAGAGCGC ATGGACCTGT ACCGACGCAT CGATCAACGA TGCGAGGAAA TGCTCACGGA CCTCTACGGG CAAGGATTAA TGAAGGAAGC CATGTGGCTC CTGGAATTAG GAATTTTGCC CAACTCCAGC TCACCTTCTA AAGCTATCGG GTACAGCCAA GCCATGGAGT TCCTGCTTGC ATGCAGGAAA TCAAGAGGTG TGACCTCCGT TCCCCAATTC TTGAATTTTG TCCAAGAGTT CCAAAGAGCA TCGAGAAATT ATGCTGAGCG ACAACTGGCA TGGTTCCGAG GCGAAGATAT ATTCCACTGG GTCGACGGAT CGATCCCCGA GAATGTAGTG GATATTATGG AGCGAGAGTA CCACACCACG TCCAATGGAG CGGCGGTATC TCGGTCTTTG GAAAGCAAGG CAAGGATGTG CCACAAACTA AAACCTCTCA ACACTTATGC AGCCCGAAAC ACAATATTCA CAAAGCCTTC AGCTTGTGCC AGCATCCTCC ACTGGATCGA GAAGACTCAA GGCGGCGTTG AACTTCTGGT CTGAATCGCA GATGCCAGAG TTGTGATTTT GTAATTCCTA TATGTACATA AACTTCACAC GCACACTTCT TTGTGCATTG AC |
CDS |
| >Mp8g02960.1 ATGATGCTGG GCGGGCACGC GCATTGTGCA ATGAGGCCGA CGATCAGAGC CACGGCGGCG GAGAATTCGA ATTCGTCCAA GGGGCGGGTG ATTGTCATCA CGGGGCCTAC TGCAGTGGGT AAGAGCTCGG CCGCCATTTC TCTGGCTCAG CGCTTGAATG GCGAGATCAT CAGCGCGGAT TCAGTGCAGA TTTATAAAGG CCTCGATGTC GGCAGCGCCA AAATTCCCTG GAGGGAGCGC CAGAATGTGC CTCATCACCT TCTGGACATC GTCCACCCGA CCGAGGAATA CAGTGCGCAG GATTTCTACG TAGATGCCAA GGCGGCTACA GACATGGTGC TCGCCAAGGG CCGGGTCCCA ATTGTGGTCG GCGGCAGTGG ACTTTACATC CGCTGGTTTC TGAATGGCAA GCTCGGCAGC CCCAAGCCCA CTGAGGAGCA AGCCGCAGCT GTCGATGCCG TGGTCACTCT CCTTCAGAAT GCCAGAGCCG GGTGGGACGA CGCGGTGAAG TATCTGTCTC GAGCCGGGGA TCCTGACACT GCACGCAGAC TGGCACGAGG CGACTGGAAC AACCTTCGGC GAGCTCTGGA AGTCATTGAG ATCACCTACC GGCCGCAGAC CTCGCTTCCG TCGCCCTTGT TCAGTGCCAC CGGGTGCTCC AATGCTCCTC AGCTCGACTA CGACTTCCAG TGCTACTTCC TGTATAGAGA GCGCATGGAC CTGTACCGAC GCATCGATCA ACGATGCGAG GAAATGCTCA CGGACCTCTA CGGGCAAGGA TTAATGAAGG AAGCCATGTG GCTCCTGGAA TTAGGAATTT TGCCCAACTC CAGCTCACCT TCTAAAGCTA TCGGGTACAG CCAAGCCATG GAGTTCCTGC TTGCATGCAG GAAATCAAGA GGTGTGACCT CCGTTCCCCA ATTCTTGAAT TTTGTCCAAG AGTTCCAAAG AGCATCGAGA AATTATGCTG AGCGACAACT GGCATGGTTC CGAGGCGAAG ATATATTCCA CTGGGTCGAC GGATCGATCC CCGAGAATGT AGTGGATATT ATGGAGCGAG AGTACCACAC CACGTCCAAT GGAGCGGCGG TATCTCGGTC TTTGGAAAGC AAGGCAAGGA TGTGCCACAA ACTAAAACCT CTCAACACTT ATGCAGCCCG AAACACAATA TTCACAAAGC CTTCAGCTTG TGCCAGCATC CTCCACTGGA TCGAGAAGAC TCAAGGCGGC GTTGAACTTC TGGTCTGA |
Protein |
| >Mp8g02960.1 MMLGGHAHCA MRPTIRATAA ENSNSSKGRV IVITGPTAVG KSSAAISLAQ RLNGEIISAD SVQIYKGLDV GSAKIPWRER QNVPHHLLDI VHPTEEYSAQ DFYVDAKAAT DMVLAKGRVP IVVGGSGLYI RWFLNGKLGS PKPTEEQAAA VDAVVTLLQN ARAGWDDAVK YLSRAGDPDT ARRLARGDWN NLRRALEVIE ITYRPQTSLP SPLFSATGCS NAPQLDYDFQ CYFLYRERMD LYRRIDQRCE EMLTDLYGQG LMKEAMWLLE LGILPNSSSP SKAIGYSQAM EFLLACRKSR GVTSVPQFLN FVQEFQRASR NYAERQLAWF RGEDIFHWVD GSIPENVVDI MEREYHTTSN GAAVSRSLES KARMCHKLKP LNTYAARNTI FTKPSACASI LHWIEKTQGG VELLV |