Mp8g04010



Description

Annotation

Database ID Description
ProSiteProfiles PS50084 Type-1 KH domain profile.
SMART SM01132 DIL_2
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
Coils Coil Coil
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF01843 DIL domain
CDD cd01384 MYSc_Myo11
FunFam G3DSA:1.20.5.190:FF:000001 unconventional myosin-Va
Pfam PF00612 IQ calmodulin-binding motif
Gene3D G3DSA:3.30.70.1590 -
ProSiteProfiles PS50096 IQ motif profile.
FunFam G3DSA:1.20.120.720:FF:000011 Myosin 2
FunFam G3DSA:4.10.1000.10:FF:000003 Zinc finger CCCH domain-containing protein
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.30.1370.10 K Homology domain, type 1
Pfam PF00063 Myosin head (motor domain)
Gene3D G3DSA:1.20.5.190 -
ProSiteProfiles PS51126 Dilute domain profile.
FunFam G3DSA:1.20.58.530:FF:000002 Class V myosin
SMART SM00242 MYSc_2a
FunFam G3DSA:1.10.10.820:FF:000001 Myosin heavy chain
Pfam PF00013 KH domain
PRINTS PR00193 Myosin heavy chain signature
PANTHER PTHR13140 MYOSIN
ProSiteProfiles PS51844 Myosin N-terminal SH3-like domain profile.
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SUPERFAMILY SSF90229 CCCH zinc finger
SUPERFAMILY SSF54791 Eukaryotic type KH-domain (KH-domain type I)
SMART SM00322 kh_6
SMART SM00015 iq_5
Gene3D G3DSA:1.20.58.530 -
Gene3D G3DSA:1.20.120.720 Myosin VI head, motor domain, U50 subdomain
SMART SM00356 c3hfinal6
Gene3D G3DSA:4.10.1000.10 -
Gene3D G3DSA:3.40.850.10 Kinesin motor domain
CDD cd15475 MyosinXI_CBD
Gene3D G3DSA:1.10.10.820 -
ProSiteProfiles PS51456 Myosin motor domain profile.
KEGG K10357 myosin V
KOG KOG0160 Myosin class V heavy chain; [Z]
KOG KOG1677 CCCH-type Zn-finger protein; N-term missing; C-term missing; [R]
KOG KOG4643 Uncharacterized coiled-coil protein; C-term missing; [S]
KOG KOG1892 Actin filament-binding protein Afadin; N-term missing; C-term missing; [Z]
MapolyID Mapoly0012s0190 -
GO GO:0007015 actin filament organization
GO GO:0003723 RNA binding
GO GO:0046872 metal ion binding
GO GO:0005524 ATP binding
GO GO:0005515 protein binding
GO GO:0030050 vesicle transport along actin filament
GO GO:0031982 vesicle
GO GO:0015629 actin cytoskeleton
GO GO:0000146 microfilament motor activity
GO GO:0005737 cytoplasm
GO GO:0003774 cytoskeletal motor activity
GO GO:0003676 nucleic acid binding
GO GO:0016459 myosin complex
GO GO:0051015 actin filament binding

Nomenclature

Gene symbol Product Transcript ID Status
MpMYOSIN_XI-2 myosin Provisional

Associated Literature (AI-based literature mining, Beta-version)

The single myosin XI gene of M. polymorpha (Mp8g04010), characterized in vitro and by heterologous expression in Arabidopsis. Its actin-sliding velocity (4.2 um/s) and ATPase activity resembled Arabidopsis myosin XI-2, it colocalized with ER along F-actin, and it rescued growth, cytoplasmic streaming and actin organization defects in Arabidopsis xi quadruple knockouts, indicating conserved motor function.

1 core 1 peripheral

Duan, Z., et al. (2020) · The Plant Journal  research experimental subject
The single myosin XI gene of M. polymorpha (Mp8g04010), characterized in vitro and by heterologous expression in Arabidopsis. Its actin-sliding velocity (4.2 um/s) and ATPase activity resembled Arabidopsis myosin XI-2, it colocalized with ER along F-actin, and it rescued growth, cytoplasmic streaming and actin organization defects in Arabidopsis xi quadruple knockouts, indicating conserved motor function.
Bowman, J. L., et al. (2022) · Plant Cell  review citation background
class XI myosin

Transcript models

Transcript ID Location Sequences Extract region
Mp8g04010.1 chr8:4318502..4340856 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g04010.2 chr8:4318502..4335572 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g04010 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g04010 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.