Mp8g04130



Description

Annotation

Database ID Description
ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile.
Pfam PF00010 Helix-loop-helix DNA-binding domain
Coils Coil Coil
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:4.10.280.10 -
SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain
SMART SM00353 finulus
PANTHER PTHR46772 BHLH DOMAIN-CONTAINING PROTEIN
KOG KOG1319 bHLHZip transcription factor BIGMAX; N-term missing; C-term missing; [K]
MapolyID Mapoly0012s0202 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0009960 endosperm development
GO GO:0046983 protein dimerization activity

Nomenclature

Gene symbol Product Transcript ID Status
MpBHLH24 transcription factor, bHLH Published
MpZOU2 basic helix loop helix transcription factor Published
MpZOU2 is an ancient paralogue of MpZOU1 (Mp4g19650). MpZOU1 is the orthologue of Arabidopsis ZHOUPI (At1g49770) also known as RGE1 (Retarded Growth of Embryo 1). MpZOU2 is not conserved in angiosperms but is found in lycophytes, gymnosperms and other lineages.

Associated Literature (AI-based literature mining, Beta-version)

basic helix loop helix transcription factor; mutant alleles made by genome editing of F1 sporelings from Tak1 X Tak2 cross (from nomenclature)

0 core 1 peripheral

Lu, Y.-T., et al. (2024) · Current Biology  research sequence comparator
ZOU paralog (MpbHLH24, Mp8g04130); ancient duplication.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g04130.1 chr8:4488291..4494592 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g04130 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g04130 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.