Mp8g07450
Description
Annotation
| Database | ID | Description |
|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. |
| Pfam | PF00505 | HMG (high mobility group) box |
| PANTHER | PTHR46261 | HIGH MOBILITY GROUP B PROTEIN 4-RELATED |
| SMART | SM00398 | hmgende2 |
| Coils | Coil | Coil |
| CDD | cd22005 | HMG-box_AtHMGB1-like |
| SUPERFAMILY | SSF47095 | HMG-box |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain |
| KEGG | K25507 | high mobility group B protein, plant |
| KOG | KOG0526 | Nucleosome-binding factor SPN, POB3 subunit; N-term missing; [KLB] |
| MapolyID | Mapoly0013s0048 | - |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpHMGBOX1 | transcription factor, HMG-box | Published |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp8g07450 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp8g07450.1 GTCTCACTCT TCTGCACTCT CTTGTCGCAG ACTGCTCTTC CCTCTTTCGC CTTGGCTTCC CCTCGCGTCT GTCCTTGCTT GCCTTACCCT CTTCGCTTCG CGTGTGTTCG TTCTCTCTTC GACCATTGCT CCGAGTGTGA GTAGTGAGTC CTTACGGCCT CGCTCGTACT CTGTTCGAGG GAGAGTCCGA GAGAAGAGCG AAAGGCTTCT GTGAGATTTC AGTCCCGGCG GTTTGGATTC GTTGTCACGC CGCCCTTGCG GTTCGTGATA GGTGATTATC CGCCGCCTGG TTGGTCGTTG CTTTTCGTTG GTATTTTTTC GCCGGATTTG CCTGCTTTGC ACTGTTACAG AGGTCTCGAG TTTCATTTCT TTTGTGCGCT CTGGGAAAGA TGTGATTGCC GACTCCCACT TCTGAGGAGT TTATTTTTTT CCAGGTCTTG CGGTGGAGCC CTCCGTCGCC GTCGAGGGCG AAGGTTGCGG GGAACTAACT TCGACAATTG CTTTTCGAAT CGACAGGTGA TCTATTCGTC CCTGCAGTGC GATGCTTCTA TGTTTTCCTA TATAATAGGT TGTTTTCCTC CACGCTCGTT TCAAGTAGGG TCTGTGTTAT TGGTTGGTTG CCTAGGCACA ACTTCCTCCT CCCCTGTTTT CTCTTTTCAT AACTTTCCAT CTACTTTGCT CTCTTCCACC TCCGTGATTA GCATACTTGA GTCTCTTAAT TTCTTTGCTG TCTGTTACGG CTGTCCTCTC ACCTTTCCAC GAGAGTAATC TTTCAGTAGG CGTTAAACGT GTCTCTCTGC TGTCGGAGCT CTTCACCTTG TGTACGCCTG TTCAAGAAGC GTATGATCTC CATATTGCTT TGACAGTTTG ACGACTTGTT TACGTTTCTG AAGTTCGTAG CGCTGTCCAA TCCTTTTTTT AATAATTGGA CTCGTTTGTT GTGCTTTAGG CCAACAGAAC TCTCTCTAAG AGAGTTTTCT TGGTCTTGTT CCGATGGTAG ACGACGGTTA TGCCGTCAGA GTTGCGTAAG TTTATTTTTT GAGCCATGAT GTGTCCTTTT TTTCGATTCA GGTGTGACTT GCCTGTATTT GAAGACTCTC GGAATTTGCT GCCATTCCGG GCTGAGTTTC CGTCTGTGGA GCGATGCTCA GTTTGATGAA TACTAGTTGC ATAACGAGTG TCCGCACCCG ATACCACGCC GGCTCTGCGT GCTCGCTCGT CGCGCATGCA TTCTTGTTCG TCTATTCTCA CTGATTGGAG TTTTCATGTG CAGCGTACTC TGAGCCTTTA CAATGAAGGA TACGGGGAAG GCGAAGAAAG GGGCGAACAC GCGGGTTGTG AAAGAGAAGA CTAGCAAAGT TGTAGACAAG TGAGTATGGG ATCTTTGTCT CTTTTACTAG CTTTGAGAGT GGTCACTGAA GTCCTCCTGT TTTCTCATTT ATCTAACGCG GAAAGAAAAT TTCAGGGATA TAAAGAAGCG TAAGGCTGTT GTCAAAGACG CCAAGCCAAA GAAGCAACGG AAGTCAAAGA AGGCGACGAA AGCTGCGAAG GACCCGAACC AACCGAAGAG GCCACCAACT GCCTTCTTCA TCTTTCTGTA AGAATAACAG ATGTTTATCT TTCGGTGTGA ATCTAATGTC TATGGAAGCC TCAACTTACA AAAATGATGA GATTGTGAAG GAGTGCGTCT CACCATTCCG GAGGGGTAGT TCCTTCTCGT ACCTCAATAG CGACACTCCT GTTTTCTCAT TCTACTTCTT ATCTGACTTC GCATTTTTTT TGGTCTCTCT GGAGTAGTGA TGAGTTCAGG AAGTCCTTTA AGGAAGACCA TCCCGAGGCC AAGGGTGTCG CTGTGGTACG TGCAGATACT CGTCCAAGCA GAATGAAGTT ATATCAGATC TTTATTCGTG CTCAGTGGTT ATATCTTTTC CTCACTTGAA GTAGTTCTTG TGACACTCCC ATATTTTTTT CTGTGCACAG GTTGGCAAAG CCGGAGGAGA GAAATGGAAA GACATGTCCG AATTCGTAAG TTCTCCTCTT TTGGCATTTT TTCTCATGAG TTGACTAGTT GAAATATTCA GGTCTCTTTG TGTGCGTAGA AATAACTGTC TCGAAATGGA CTTTTCAGGA GAAGGCTCCC TACATTGCCA AGGCCCAACA GAAGAAGCAG GAGTATGATA AGTCCATGTC AGCATACAAC AAGCAAAAGC AGGTACTGGT TAATGCTTTA TGTTCCTCCA GCTAATGCTA CCCCACTACA CTGTCTGCCA GTAACATTCC TCCCACCAAC TGTCTCTATC CCTAACTCCA GTTCCAAATC AAGCACCCTG TTTTACGCTC CTTGCTACCT CTACAGAGAA TGCCTTGGCT TCTCCTTCTC ATTGTATTCG ACGTTTTGAT GCTCTTCAAT CTGAAGAGCA AACTGTTGTA ATCCTTAGTT GTGTAATCCC CGCGAGCGCT TGGTTCCTCC CATCTGGAGA AGGGCCTTAT TTAATTAGGT CAGTTTTACA TCGCAACTGG TACAACCCTC TAACCGTTTA TTGTCAACTG ATATCAGGAC GATGAAGAGG ACGACGAGGG AACACCTGAG GAATCGGATA AGTCAAAGCA ATCCGAAATC AATGACGATG ATGAGGAGGC GTCAGAGGTA AAAAGTGCTA CCTGGACGGA TTGTTCTTTC ACACTAGAAA TGTACAACAA CTAAGTCTAC ATTTTAAAAA ATCGTCTCAC CATCCAGAAT TTCCATGCGA TACAGGAGGA GGATGACGAT ATGGACGATT AGTCTTGCCA CCTAATCAAT ATCTGCAGTG TTAGGTGAGT CCACCTCTGC CTTTTAATGG TTATATTATC GTGCATCGAT TGAAATGTTG ATGATTATGT GTCCTTGGAA TAGATGGAAC GAAGAATACT GGGAAGAGAA TACATTTCAA AGTTTGCGCA ACTGCTGGGA CTAACTTTTA AAAGGAAATG TTCTCTCAAG CCCCTCTCTT TGTTAATGTT TTCCGTTTTT TCTCCTGTGC AGGATAGAAA GGAAGACCTG CCTATTCAGG AGAGTTGACC ATCAACTCGT TTTGTAAATG CATTTCAGAT CGTACGTTGG GCTAGAGCAC TGAAGTCAGT AATTTGTCAG AAGTAGGCGT AGTGAAGGTC ATTGTACATT AGAAGTAGTG GTGGTTTGAT ACTGTATCAG TCTTGATAGA CACGCGTATC ATGCACAATA TGCCATGCCT TCGGAGCGGA GACCTGAAAA GTGCATCTCA GGGTCTTAAC TCCTCTGAAG CATGTTTAAC CTGTTCGAGC TATCTGGGTC ATCTGTGTCA AATGTAATGG CTGGTTATGT GCATGGAGAG AACTATTCAG TTGCAAAGGT TTATTCTTAG CACAGGAGCC ATCAATCTTT TTGCAGAGTT GGTTGGATGT GCATGATCCA TGTGCCCAAT GTGAACGGAG CATGTGTCCT TACTCTTGTG GCTTAAATTC ATTTGTGAAA GCTTTAGAGC TTTTTCTGAA ATAAATTGAG CCATTTTCAG TTTATTCG |
mRNA UTR + CDS |
| >Mp8g07450.1 GTCTCACTCT TCTGCACTCT CTTGTCGCAG ACTGCTCTTC CCTCTTTCGC CTTGGCTTCC CCTCGCGTCT GTCCTTGCTT GCCTTACCCT CTTCGCTTCG CGTGTGTTCG TTCTCTCTTC GACCATTGCT CCGAGTGTGA GTAGTGAGTC CTTACGGCCT CGCTCGTACT CTGTTCGAGG GAGAGTCCGA GAGAAGAGCG AAAGGCTTCT GTGAGATTTC AGTCCCGGCG GTTTGGATTC GTTGTCACGC CGCCCTTGCG GTTCGTGATA GGTCTTGCGG TGGAGCCCTC CGTCGCCGTC GAGGGCGAAG GTTGCGGGGA ACTAACTTCG ACAATTGCTT TTCGAATCGA CAGCGTACTC TGAGCCTTTA CAATGAAGGA TACGGGGAAG GCGAAGAAAG GGGCGAACAC GCGGGTTGTG AAAGAGAAGA CTAGCAAAGT TGTAGACAAG GATATAAAGA AGCGTAAGGC TGTTGTCAAA GACGCCAAGC CAAAGAAGCA ACGGAAGTCA AAGAAGGCGA CGAAAGCTGC GAAGGACCCG AACCAACCGA AGAGGCCACC AACTGCCTTC TTCATCTTTC TTGATGAGTT CAGGAAGTCC TTTAAGGAAG ACCATCCCGA GGCCAAGGGT GTCGCTGTGG TTGGCAAAGC CGGAGGAGAG AAATGGAAAG ACATGTCCGA ATTCGAGAAG GCTCCCTACA TTGCCAAGGC CCAACAGAAG AAGCAGGAGT ATGATAAGTC CATGTCAGCA TACAACAAGC AAAAGCAGGA CGATGAAGAG GACGACGAGG GAACACCTGA GGAATCGGAT AAGTCAAAGC AATCCGAAAT CAATGACGAT GATGAGGAGG CGTCAGAGGA GGAGGATGAC GATATGGACG ATTAGTCTTG CCACCTAATC AATATCTGCA GTGTTAGGAT AGAAAGGAAG ACCTGCCTAT TCAGGAGAGT TGACCATCAA CTCGTTTTGT AAATGCATTT CAGATCGTAC GTTGGGCTAG AGCACTGAAG TCAGTAATTT GTCAGAAGTA GGCGTAGTGA AGGTCATTGT ACATTAGAAG TAGTGGTGGT TTGATACTGT ATCAGTCTTG ATAGACACGC GTATCATGCA CAATATGCCA TGCCTTCGGA GCGGAGACCT GAAAAGTGCA TCTCAGGGTC TTAACTCCTC TGAAGCATGT TTAACCTGTT CGAGCTATCT GGGTCATCTG TGTCAAATGT AATGGCTGGT TATGTGCATG GAGAGAACTA TTCAGTTGCA AAGGTTTATT CTTAGCACAG GAGCCATCAA TCTTTTTGCA GAGTTGGTTG GATGTGCATG ATCCATGTGC CCAATGTGAA CGGAGCATGT GTCCTTACTC TTGTGGCTTA AATTCATTTG TGAAAGCTTT AGAGCTTTTT CTGAAATAAA TTGAGCCATT TTCAGTTTAT TCG |
CDS |
| >Mp8g07450.1 ATGAAGGATA CGGGGAAGGC GAAGAAAGGG GCGAACACGC GGGTTGTGAA AGAGAAGACT AGCAAAGTTG TAGACAAGGA TATAAAGAAG CGTAAGGCTG TTGTCAAAGA CGCCAAGCCA AAGAAGCAAC GGAAGTCAAA GAAGGCGACG AAAGCTGCGA AGGACCCGAA CCAACCGAAG AGGCCACCAA CTGCCTTCTT CATCTTTCTT GATGAGTTCA GGAAGTCCTT TAAGGAAGAC CATCCCGAGG CCAAGGGTGT CGCTGTGGTT GGCAAAGCCG GAGGAGAGAA ATGGAAAGAC ATGTCCGAAT TCGAGAAGGC TCCCTACATT GCCAAGGCCC AACAGAAGAA GCAGGAGTAT GATAAGTCCA TGTCAGCATA CAACAAGCAA AAGCAGGACG ATGAAGAGGA CGACGAGGGA ACACCTGAGG AATCGGATAA GTCAAAGCAA TCCGAAATCA ATGACGATGA TGAGGAGGCG TCAGAGGAGG AGGATGACGA TATGGACGAT TAG |
Protein |
| >Mp8g07450.1 MKDTGKAKKG ANTRVVKEKT SKVVDKDIKK RKAVVKDAKP KKQRKSKKAT KAAKDPNQPK RPPTAFFIFL DEFRKSFKED HPEAKGVAVV GKAGGEKWKD MSEFEKAPYI AKAQQKKQEY DKSMSAYNKQ KQDDEEDDEG TPEESDKSKQ SEINDDDEEA SEEEDDDMDD |