Mp8g09100



Description

Annotation

Database ID Description
PANTHER PTHR11739 CITRATE SYNTHASE
Pfam PF00285 Citrate synthase, C-terminal domain
ProSitePatterns PS00480 Citrate synthase signature.
Gene3D G3DSA:1.10.230.10 -
NCBIfam TIGR01793 citrate (Si)-synthase, eukaryotic
Coils Coil Coil
FunFam G3DSA:1.10.230.10:FF:000001 Citrate synthase
CDD cd06105 ScCit1-2_like
Gene3D G3DSA:1.10.580.10 Citrate Synthase, domain 1
SUPERFAMILY SSF48256 Citrate synthase
FunFam G3DSA:1.10.580.10:FF:000001 Citrate synthase
PRINTS PR00143 Citrate synthase signature
KEGG K01647 citrate synthase [EC:2.3.3.1]
KOG KOG2617 Citrate synthase; [C]
MapolyID Mapoly0063s0010 -
GO GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer
GO GO:0006099 tricarboxylic acid cycle
GO GO:0005759 mitochondrial matrix
GO GO:0006101 citrate metabolic process
GO GO:0005975 carbohydrate metabolic process
GO GO:0004108 citrate (Si)-synthase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpCIS1 organic acid biosynthesis and exudation Provisional

Associated Literature (AI-based literature mining, Beta-version)

Citrate synthase. Up-regulated at 12 HPT, down at 24 and 150 HPT in transcriptome; qPCR showed strongly increased transcripts at 150 HPT under low Pi, supporting citrate-based organic acid response.

1 core 0 peripheral

Rico-Reséndiz, F., et al. (2020) · International Journal of Molecular Sciences  research experimental subject
Citrate synthase. Up-regulated at 12 HPT, down at 24 and 150 HPT in transcriptome; qPCR showed strongly increased transcripts at 150 HPT under low Pi, supporting citrate-based organic acid response.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g09100.1 chr8:11986796..11990162 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g09100 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g09100 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.