Mp8g13820



Description

Annotation

Database ID Description
ProSiteProfiles PS51421 small GTPase Ras family profile.
ProSiteProfiles PS51419 small GTPase Rab1 family profile.
ProSiteProfiles PS51420 small GTPase Rho family profile.
FunFam G3DSA:3.40.50.300:FF:000295 Ras-related protein Rab7
PRINTS PR00449 Transforming protein P21 ras signature
SMART SM00175 rab_sub_5
SMART SM00173 ras_sub_4
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR47981 RAB FAMILY
Pfam PF00071 Ras family
Gene3D G3DSA:3.40.50.300 -
NCBIfam TIGR00231 small GTP-binding protein domain
SMART SM00174 rho_sub_3
SMART SM00176 ran_sub_2
CDD cd01862 Rab7
KEGG K07897 Ras-related protein Rab-7A
KOG KOG0394 Ras-related GTPase; [R]
MapolyID Mapoly0946s0001 -
GO GO:0003924 GTPase activity
GO GO:0005774 vacuolar membrane
GO GO:0005525 GTP binding

Nomenclature

Gene symbol Product Transcript ID Status
MpRAB7 RAB GTPase Published

Associated Literature (AI-based literature mining, Beta-version)

Endosomal Rab GTPase; mCitrine-MpRab7 transgenic plants showed strong labeling of intracellular infection structures and hyphae in living Marchantia cells at 3 dpi, indicating recruitment of trafficking machinery to the pathogen interface.

1 core 1 peripheral

Carella, P., et al. (2018) · Proceedings of the National Academy of Sciences USA: doi/10.1073/pnas.1717900115  research experimental subject
Endosomal Rab GTPase; mCitrine-MpRab7 transgenic plants showed strong labeling of intracellular infection structures and hyphae in living Marchantia cells at 3 dpi, indicating recruitment of trafficking machinery to the pathogen interface.
Minamino, N., et al. (2018) · Plant and Cell Physiology  research sequence comparator
RAB7; family inventory.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g13820.1 chr8:17757092..17760257 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g13820 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g13820 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.