Mp8g14970



Description

Annotation

Database ID Description
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
Pfam PF05183 RNA dependent RNA polymerase
PANTHER PTHR23079 RNA-DEPENDENT RNA POLYMERASE
Pfam PF00076 RNA recognition motif
Gene3D G3DSA:3.30.70.330 -
SUPERFAMILY SSF54928 RNA-binding domain, RBD
CDD cd00590 RRM_SF
KEGG K11699 RNA-dependent RNA polymerase [EC:2.7.7.48]
KOG KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference; [A]
MapolyID Mapoly0151s0009 -
GO GO:0003723 RNA binding
GO GO:0030422 siRNA processing
GO GO:0003968 RNA-dependent RNA polymerase activity
GO GO:0031380 nuclear RNA-directed RNA polymerase complex
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpRDR5/6-2 siRNA biogenesis, RNA-dependent RNA polymerase Provisional

Associated Literature (AI-based literature mining, Beta-version)

siRNA biogenesis, RNA-dependent RNA polymerase (from nomenclature)

0 core 1 peripheral

Ros-Moner, E., et al. (2024) · Nature Communications  research experimental background
Upregulated upon TMV infection, reported alongside other RNA-silencing pathway genes.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g14970.1 chr8:19119062..19124900 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g14970 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g14970 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.