Mp8g15610



Description

Annotation

Database ID Description
FunFam G3DSA:1.10.10.10:FF:000020 SWI/SNF complex subunit SMARCC2 isoform c
Gene3D G3DSA:1.10.10.60 -
SUPERFAMILY SSF46689 Homeodomain-like
FunFam G3DSA:1.10.10.60:FF:000014 SWI/SNF complex subunit SMARCC2 isoform C
SUPERFAMILY SSF57850 RING/U-box
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd00167 SANT
Pfam PF00249 Myb-like DNA-binding domain
ProSiteProfiles PS50090 Myb-like domain profile.
SMART SM00717 sant
ProSiteProfiles PS51293 SANT domain profile.
Pfam PF04433 SWIRM domain
Coils Coil Coil
PANTHER PTHR12802 SWI/SNF COMPLEX-RELATED
ProSiteProfiles PS50934 SWIRM domain profile.
Gene3D G3DSA:1.10.10.10 -
Pfam PF16495 SWIRM-associated region 1
KEGG K11649 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
KOG KOG1279 Chromatin remodeling factor subunit and related transcription factors; [B]
MapolyID Mapoly0079s0052 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB15 transcription factor, MYB Published
MpSWI3A/B Subunit of SWITCH/SUCROSE NONFERMENTING (SWI/SNF) chromatin-remodeling complex Published

Associated Literature (AI-based literature mining, Beta-version)

Main subject. A CRISPR promoter mutation in MpSWI3A/B (Mp8g15610; aka Mapoly0079s0052), a SWI/SNF chromatin-remodeling complex subunit, disrupted male gametangiophore development and spermiogenesis while amplifying vegetative (asexual) propagation, identifying it as a regulator balancing the vegetative-to-reproductive transition.

1 core 0 peripheral

Lozano-Quiles M, Raval PK, Rensing SA, Gould SB. (2026) · Plant Reproduction  research experimental subject
Main subject. A CRISPR promoter mutation in MpSWI3A/B (Mp8g15610; aka Mapoly0079s0052), a SWI/SNF chromatin-remodeling complex subunit, disrupted male gametangiophore development and spermiogenesis while amplifying vegetative (asexual) propagation, identifying it as a regulator balancing the vegetative-to-reproductive transition.

Transcript models

Transcript ID Location Sequences Extract region
Mp8g15610.1 chr8:20178155..20183158 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g15610 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g15610 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.