Mp8g16290
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Gene3D | G3DSA:1.20.1220.12 | Malate synthase, domain III |
| Pfam | PF01274 | Malate synthase, TIM barrel domain |
| PIRSF | PIRSF001363 | Malate_synth |
| ProSitePatterns | PS00510 | Malate synthase signature. |
| CDD | cd00727 | malate_synt_A |
| Pfam | PF20659 | Malate synthase, C-terminal |
| NCBIfam | TIGR01344 | malate synthase A |
| PANTHER | PTHR42902 | MALATE SYNTHASE |
| FunFam | G3DSA:1.20.1220.12:FF:000001 | Malate synthase |
| SUPERFAMILY | SSF51645 | Malate synthase G |
| FunFam | G3DSA:3.20.20.360:FF:000001 | Malate synthase |
| Pfam | PF20656 | Malate synthase, N-terminal domain |
| Gene3D | G3DSA:3.20.20.360 | Malate synthase, domain 3 |
| KEGG | K01638 | malate synthase [EC:2.3.3.9] |
| KOG | KOG1261 | Malate synthase; [C] |
| MapolyID | Mapoly0154s0035 | - |
| GO | GO:0006097 | glyoxylate cycle |
| GO | GO:0003824 | catalytic activity |
| GO | GO:0005737 | cytoplasm |
| GO | GO:0004474 | malate synthase activity |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpMLS5 | organic acid biosynthesis and exudation | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
organic acid biosynthesis and exudation (from nomenclature)
0 core 2 peripheral
Rico-Reséndiz, F., et al. (2020)
· International Journal of Molecular Sciences research experimental background
Malate synthase family member with variable expression in the transcriptome.
Jibran, R., et al. (2024b)
· Frontiers in Plant Science research experimental background
Malate synthase; DEG in Mpccd7.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp8g16290 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp8g16290.1 CCCATCGATT TCTCGGCCCC CACGGAATTT TGTAGATACT TTCCTTCTTA CCTCTTCTCG AGAGCCAAGC GCAGGGCGGC GGGTCCAATT CGATCGAAGT CCGCAGGTGC GTGTTGCTCA GTGCTGAATT TCTGCTCTTC TGTCCGTATA CTCTCCTTAA TCTCGAGTAT GTATTATTTT CTAGACCTGG CTTCAGCCAC CGCAACCACG GATGGCTGCG GTGGCTGAAA TTCATGCTCG ATGCATGAAT TTCATGTATG GCAGGTCTTG TGTTTACTGC CGGTGGTACT TCCTTCGAAT CCGACCCTGA GCCTCGAGCT GCAGGAATCA AATACTTAAC AGTAAAGGTC CAGTCGAGGT TCCCTCCGGT CTTACAGCGT CTGATTTGAG ATATATCAGT CACATCATGT CCTTGCGCTG CGTTGAAGAA ATAGAGTCTG AATGAGTCTC TGTCCGTCTA TTCGTTGATT GATTGTCGAG ACCTCCAGAG AGCAGAGTAT GCCTTCCTTC CTTCATTCTC TTTCAACTCG TTCTCGTGTT GAGATTTTCG CCTCCAGTCT CGGCCCCGCC GGTGATCATG ACATCCTGGC CCAGGGACCC AAATATCGGA CCAGCTGCTG CAGCTGCAGC AGCTGGTCCG ACTTGTACTA AGTCTGGGGC CAGCTCGCTC TCGCTCTTCA TCCCGAGTCC ACTTCTGACA GTTCAAAGCA GAGCCAATTT TGCGTCTCAG AGTCCTGGAA TTTTTGGATC TGAAGCTCTG GTGAGGGAGG AGAGGGGATT GAGGTAAACA GAGACGGGGA GCTTGTCGTG TGGCTTTTTT TCGGTGCTGG GGGTGCAGGA GGCGGTCGGA TTTGACGAGC TGTGTGGGGG GATTGGGGGT GTGTCAGCAG AAGGAGGAGG AGGAAGCAGC AGATAAAGCA GCAGCGATGG CGGGGGGAGT GAGGGGAGGA CTCCCAGCGG GGGTTGAGAT CCGGGGCGAG TTCCGGCCGT GCTACGAGTC GATTCTGACG CACGAGGCGC TGGCCTTCGT GGCGGCGCTG GAGCGCGAGT TCCGGCCGCG CGTCAAGTAC GTCCTCCAGT GCCGGAAAGA GCAGCAGGCG CGCTTCGACG CCGGCGAGCT CCCCAGGTTC GACCCGGCCA CCGCCGCCAT CCGCGACGGC GACTGGACCT GCGCCCCCAT CCCGGATGTC ATCGCCGACC GCCGCGTCGA GATCACCGGC CCCGTCGAGC GCAAGATGAT CATCAACGCC CTCAACAGCG GCGCCAAAAT GTTCATGGTA CGCAGTCGAA GTTGCAGTTT CCTTTTTCAC AAACCAACCA CGTTAGTTGG AAAATCCCAG TCGAAACCTC GACGACGTTG TTCCGCAGCC TATCCCGAGT ACGTGTCCGA ACTCGGGATG TCCTCGCGGG GTACAGACCG AGATGTCGGG ACGGCCTGTA CCGATATGGA GCAGCACCCT CGCGTCCTTT TTAACATATT CTCCAGTTTC GGTGGAAATG TGACTAAATT TTCTTTGTGG ATGAATTTCA GGCCGATTTC GAAGACTCTC TGGCCCCAAC TTGGGACAAC ATCGTCCGAG GCCAGATCAA CCTGCGCGAC GCCGTCAACA GGACCATCAC TTTCGAGGAC ACGGCCCGCA ACAAGGTCAG CCGCCGATCA CCGATAATCA AAACACACCT GAACATGAAT CACCTCGACA ATTTATTCAT TATAATTGTC AATACGATTT ATTACAAGCA TTAGAGGAAT GTAACCAAAT TTGCATCTTC GATGATATTC GTAAATGATA AAATGATAAG ATGATTTCAT TTTAACACTA TAGCAAGCTA GTATACCGTA ATAAACCGAA ACGGATTTTC TACCTTGGTA GTGGGAGATT TTTAAAGCAC CAATTTTTTA TGTATAAGTA TCAATACGGT TTACTACAAG CAGTAGAGAA AATGTAGCCA AAATTGCATT TTCGATGAAA TTCTTGAATG ATAAAATTAT CCGTAAAATT TTAACGTAAT GGCAAGCTGG TATTCTGAAA TAAATTCGAC GTGTAATTCC TAACTTGTAT TAGGGACAGT AGAAAACCCG GTTTTGTTTC TAATTGTTAA CACGGTTTAT TACAAGCAAT TGAGAAATTC GATGAAATGT GTTGGACGGG GGGAGCAGAA GTACGAGCTG AAGGAGAAGA CGGCGGTGCT GCTGGTGAGG CCGCGCGGCT GGCACCTGCC GGAGGCGCAC CTGGAGATCG ACGGCGAGCC GGCGACGGGC GCCCTGGTGG ACTTCGGGCT CTACTACTTC CACAACCAGG CGGCGTTCCG CGCGGCGCAC GGGCAGAGCG GGCCCTTCTT CTACTTGCCC AAGATGCAGC ACGCGCGCGA GGCCGCCCTC TGGAACGCCG TCTTCGAGCG CGCGCAGGCG GCGGCGGGCG CTCCGCGCGG GAGCGTGCGC GCGACCGTGC TGATCGAGAC GCTGCCGGCC GTGTTCCAGA TGCACGAGAT CCTGTACGCT TTGCGGGATC ACTCGGCGGG GCTCAACTGC GGCCGCTGGG ACTACATCTT CAGCTTCATC AAGACGGTGC GCGCGCACGC CGACCGCCTG CTGCCCGACC GCGTGCTCGT CGGCATGACG CAGCCCTTCC TCCGCAACTA CACCGAGCTC CTCATCCAGA CCTGCCACCG CCGCGGCGTC CACGCCATGG GCGGCATGGT GCGTCCTCGC CACCTCCTCC CTACTTCCTT CCCCGTCACC CTCGCAACCT CCCTCGTTTT TTACGATCGA TTTTATCACA AGTCTTATTC CTGTCAGTCA ATCGATGTTT TGAATCGGAA ATTGAGGTCT TGACGATGTT GCATTTTGGT AATTTTTTTG ATGAGTTCGA TGATACTATA CAATGTCAAC CAAAAAAAGT CGAACTACCA AGAGCGTTGT TGTGCTTTGC TTCTGGAGTT TTGATAATAG AAGTACTTTT ACTTATTATT ATGAGAATCA TGATAGTTAT GATGATAATA TTAGAGTATT CTCTGGTTAA ACCCTTTGAT CGTCAGATAT GGGAGTTCAT TTTCAGATAG TGTTTGCTGC TTTTATTATG TGCTGATATT TGGTTATGAT TATTATTCTT TTGAGCTCAT TATCAGATAT GGGAGTTCAT TTTCAGATAG TGTCTGCTGT TTTTAACCCG AGATTTTGAT AATGTGATGA TATGTGGTTA TGATTATGAT TTTTTGGTGC TCATTATTTA AGATTTGTCT GGTTTTGATT TCTATGTCCT CGGAGCGTGA TTTAACTTGC ATTATTGATT TGATAAATGA GAGGAGAATA TATCGGAACT CACTGGCAGC GTGATTGAAC GTGGGTCCGA GTGAGTGAGT GACCGATGGG TTGACTCCGG GTTGACGTGA CGTGACCTGA CTCTGACCGT GGACCTGACC GGGGGAGCGC AGGCGGCACA GATCCCGATC CGGGACGACA AGGCGGCGAA CGACAAGGCG GCGGAGCTGG TGCGGGCCGA CAAGCTGCGC GAGGTGAGGG CCGGGCACGA CGGCACGTGG GCCGCGCACC CGGGCCTCGT CCCCATGGTG CTCGAGGTGT TCGACGCCAA CATGCCCGGC GCCAACCAGG TCCACGTCAA GCGCGACGAC GTCTCCGTCA CCTGCCAGGA CCTCCTCCAG ATGCCCAAGG GCGTCAGGTA CCCGACCTCT CCCCTTTCCC CTTACTCAAA CACAATCATT CGACAATTCA GACGATGACT GCAATTCGAA CCTGGTTCCC CATGCGCTAC GTAGTCACCG TGAAGCCTCT GACGCTGTTT TCCATCGGAC CATGGTATCG ACTGTACCCA GTCATTGCAA AAATGCAACC TCGTCGTCGA GTACTTCAAT ATATATCTAT TATTTATATT CATATTCATA TCCATTCATT CATCCATCAG TATATACAAC GTAGTCATCT TATGTGTATA TAAAATAACA GAGTGAAGTA ACGTATATGA AATGTAAAAC TAAATCAAAG TCTTAACATA AGTGTAGTGA TTATATATAT ATATAAAAAA ATTACAGCGA TCTGATTCAA CAGAAATTCA ACGAACATTC GGTTTTTAAT TGGCTAGTAA ATGTTTGTGA AATTATTGTC GATTGTATCG ATGATGAATT TACGTATCAG AGGTTGAGAT CGACAGATTG TGAAGTTTTG TGTGTTTCGC TCGTAGTTTG TGACCGACTG TCAGAAGATT GTTGCGGAAT AGAAAATATT CGATAGTTTG AAAGAGAGAA GAGCGACTGA CGGGGTGGAA TGGGCAGGAC GCTGGAGGGG CTGCGGCTGA ACACGAGGGT GGGGGTGCAG TACGTGGCGG CGTGGTTGGG GGGTACGGGG TCGGTGCCGC TGTACAATCT GATGGAGGAC GCGGCGACGG CGGAGATCAG CCGAGTGCAG AACTGGCAGT GGATCAAGTA CGGGGCGATG CTGGACGGCG AGCTGGTGCC GACGCGCGTG ACGCGCGACG TCTTCCAGCG CGTACTGGCC GAGGAGCTGG AGCGCATCGA GCGTGAGGTT GGCGCTCCGC GCTTCCGCGC CGGGCGCTAC CAGCAGGCGG CGCAGCTCTT CGCTCGCCAG TGCCTGGCCG AGCAGCTCGA CGACTTCCTC ACCCTCGACG CCTACCGCCA CATCGTCCGC CTCGTCCCCT CCTCCCGCAT CTAATCGCCC TCCTTTTTCC TTCGAATTCC ATCGTCGTCC CATGGCGCCA GAAGAAAATC GACCTCGAGG GAGCACGAGT CGAGGGGTTT TGTATGCAGC CCTCGTCCCT GGCGCCCTCG CGCTGATCGC AGCCACTACT GCACCAGCAA ATCGAGTTTG AGGGAGGACG AGTTGAGGAG CTTTGAATGG AGCTCTGAGA TGAGGGCGAG CCCGCGCTGC GCAAATTTGG CAGTGCTGTA GGAAGAGAGA GAGAGAGAAG ACAGGTCGAA GAAGTTGGTT TGTGGAGAAT TGAGGGGCGA GATTGGGTCG TCTGGGCACG TTCATTGTGT AGATATGAGC ACAGTGGTGG GAGGGATTTC TACATCGATT CATGATGGTG GTAATGTCCT CGAGACGTTA TCGAGTGTAA ATGTCAATTT CGAAGAAAAT AATTTATCAT AGTTTTGGCC GATATTTCTG AA |
mRNA UTR + CDS |
| >Mp8g16290.1 CCCATCGATT TCTCGGCCCC CACGGAATTT TGTAGATACT TTCCTTCTTA CCTCTTCTCG AGAGCCAAGC GCAGGGCGGC GGGTCCAATT CGATCGAAGT CCGCAGAAGG AGGAGGAGGA AGCAGCAGAT AAAGCAGCAG CGATGGCGGG GGGAGTGAGG GGAGGACTCC CAGCGGGGGT TGAGATCCGG GGCGAGTTCC GGCCGTGCTA CGAGTCGATT CTGACGCACG AGGCGCTGGC CTTCGTGGCG GCGCTGGAGC GCGAGTTCCG GCCGCGCGTC AAGTACGTCC TCCAGTGCCG GAAAGAGCAG CAGGCGCGCT TCGACGCCGG CGAGCTCCCC AGGTTCGACC CGGCCACCGC CGCCATCCGC GACGGCGACT GGACCTGCGC CCCCATCCCG GATGTCATCG CCGACCGCCG CGTCGAGATC ACCGGCCCCG TCGAGCGCAA GATGATCATC AACGCCCTCA ACAGCGGCGC CAAAATGTTC ATGGCCGATT TCGAAGACTC TCTGGCCCCA ACTTGGGACA ACATCGTCCG AGGCCAGATC AACCTGCGCG ACGCCGTCAA CAGGACCATC ACTTTCGAGG ACACGGCCCG CAACAAGAAG TACGAGCTGA AGGAGAAGAC GGCGGTGCTG CTGGTGAGGC CGCGCGGCTG GCACCTGCCG GAGGCGCACC TGGAGATCGA CGGCGAGCCG GCGACGGGCG CCCTGGTGGA CTTCGGGCTC TACTACTTCC ACAACCAGGC GGCGTTCCGC GCGGCGCACG GGCAGAGCGG GCCCTTCTTC TACTTGCCCA AGATGCAGCA CGCGCGCGAG GCCGCCCTCT GGAACGCCGT CTTCGAGCGC GCGCAGGCGG CGGCGGGCGC TCCGCGCGGG AGCGTGCGCG CGACCGTGCT GATCGAGACG CTGCCGGCCG TGTTCCAGAT GCACGAGATC CTGTACGCTT TGCGGGATCA CTCGGCGGGG CTCAACTGCG GCCGCTGGGA CTACATCTTC AGCTTCATCA AGACGGTGCG CGCGCACGCC GACCGCCTGC TGCCCGACCG CGTGCTCGTC GGCATGACGC AGCCCTTCCT CCGCAACTAC ACCGAGCTCC TCATCCAGAC CTGCCACCGC CGCGGCGTCC ACGCCATGGG CGGCATGGCG GCACAGATCC CGATCCGGGA CGACAAGGCG GCGAACGACA AGGCGGCGGA GCTGGTGCGG GCCGACAAGC TGCGCGAGGT GAGGGCCGGG CACGACGGCA CGTGGGCCGC GCACCCGGGC CTCGTCCCCA TGGTGCTCGA GGTGTTCGAC GCCAACATGC CCGGCGCCAA CCAGGTCCAC GTCAAGCGCG ACGACGTCTC CGTCACCTGC CAGGACCTCC TCCAGATGCC CAAGGGCGTC AGGACGCTGG AGGGGCTGCG GCTGAACACG AGGGTGGGGG TGCAGTACGT GGCGGCGTGG TTGGGGGGTA CGGGGTCGGT GCCGCTGTAC AATCTGATGG AGGACGCGGC GACGGCGGAG ATCAGCCGAG TGCAGAACTG GCAGTGGATC AAGTACGGGG CGATGCTGGA CGGCGAGCTG GTGCCGACGC GCGTGACGCG CGACGTCTTC CAGCGCGTAC TGGCCGAGGA GCTGGAGCGC ATCGAGCGTG AGGTTGGCGC TCCGCGCTTC CGCGCCGGGC GCTACCAGCA GGCGGCGCAG CTCTTCGCTC GCCAGTGCCT GGCCGAGCAG CTCGACGACT TCCTCACCCT CGACGCCTAC CGCCACATCG TCCGCCTCGT CCCCTCCTCC CGCATCTAAT CGCCCTCCTT TTTCCTTCGA ATTCCATCGT CGTCCCATGG CGCCAGAAGA AAATCGACCT CGAGGGAGCA CGAGTCGAGG GGTTTTGTAT GCAGCCCTCG TCCCTGGCGC CCTCGCGCTG ATCGCAGCCA CTACTGCACC AGCAAATCGA GTTTGAGGGA GGACGAGTTG AGGAGCTTTG AATGGAGCTC TGAGATGAGG GCGAGCCCGC GCTGCGCAAA TTTGGCAGTG CTGTAGGAAG AGAGAGAGAG AGAAGACAGG TCGAAGAAGT TGGTTTGTGG AGAATTGAGG GGCGAGATTG GGTCGTCTGG GCACGTTCAT TGTGTAGATA TGAGCACAGT GGTGGGAGGG ATTTCTACAT CGATTCATGA TGGTGGTAAT GTCCTCGAGA CGTTATCGAG TGTAAATGTC AATTTCGAAG AAAATAATTT ATCATAGTTT TGGCCGATAT TTCTGAA |
CDS |
| >Mp8g16290.1 ATGGCGGGGG GAGTGAGGGG AGGACTCCCA GCGGGGGTTG AGATCCGGGG CGAGTTCCGG CCGTGCTACG AGTCGATTCT GACGCACGAG GCGCTGGCCT TCGTGGCGGC GCTGGAGCGC GAGTTCCGGC CGCGCGTCAA GTACGTCCTC CAGTGCCGGA AAGAGCAGCA GGCGCGCTTC GACGCCGGCG AGCTCCCCAG GTTCGACCCG GCCACCGCCG CCATCCGCGA CGGCGACTGG ACCTGCGCCC CCATCCCGGA TGTCATCGCC GACCGCCGCG TCGAGATCAC CGGCCCCGTC GAGCGCAAGA TGATCATCAA CGCCCTCAAC AGCGGCGCCA AAATGTTCAT GGCCGATTTC GAAGACTCTC TGGCCCCAAC TTGGGACAAC ATCGTCCGAG GCCAGATCAA CCTGCGCGAC GCCGTCAACA GGACCATCAC TTTCGAGGAC ACGGCCCGCA ACAAGAAGTA CGAGCTGAAG GAGAAGACGG CGGTGCTGCT GGTGAGGCCG CGCGGCTGGC ACCTGCCGGA GGCGCACCTG GAGATCGACG GCGAGCCGGC GACGGGCGCC CTGGTGGACT TCGGGCTCTA CTACTTCCAC AACCAGGCGG CGTTCCGCGC GGCGCACGGG CAGAGCGGGC CCTTCTTCTA CTTGCCCAAG ATGCAGCACG CGCGCGAGGC CGCCCTCTGG AACGCCGTCT TCGAGCGCGC GCAGGCGGCG GCGGGCGCTC CGCGCGGGAG CGTGCGCGCG ACCGTGCTGA TCGAGACGCT GCCGGCCGTG TTCCAGATGC ACGAGATCCT GTACGCTTTG CGGGATCACT CGGCGGGGCT CAACTGCGGC CGCTGGGACT ACATCTTCAG CTTCATCAAG ACGGTGCGCG CGCACGCCGA CCGCCTGCTG CCCGACCGCG TGCTCGTCGG CATGACGCAG CCCTTCCTCC GCAACTACAC CGAGCTCCTC ATCCAGACCT GCCACCGCCG CGGCGTCCAC GCCATGGGCG GCATGGCGGC ACAGATCCCG ATCCGGGACG ACAAGGCGGC GAACGACAAG GCGGCGGAGC TGGTGCGGGC CGACAAGCTG CGCGAGGTGA GGGCCGGGCA CGACGGCACG TGGGCCGCGC ACCCGGGCCT CGTCCCCATG GTGCTCGAGG TGTTCGACGC CAACATGCCC GGCGCCAACC AGGTCCACGT CAAGCGCGAC GACGTCTCCG TCACCTGCCA GGACCTCCTC CAGATGCCCA AGGGCGTCAG GACGCTGGAG GGGCTGCGGC TGAACACGAG GGTGGGGGTG CAGTACGTGG CGGCGTGGTT GGGGGGTACG GGGTCGGTGC CGCTGTACAA TCTGATGGAG GACGCGGCGA CGGCGGAGAT CAGCCGAGTG CAGAACTGGC AGTGGATCAA GTACGGGGCG ATGCTGGACG GCGAGCTGGT GCCGACGCGC GTGACGCGCG ACGTCTTCCA GCGCGTACTG GCCGAGGAGC TGGAGCGCAT CGAGCGTGAG GTTGGCGCTC CGCGCTTCCG CGCCGGGCGC TACCAGCAGG CGGCGCAGCT CTTCGCTCGC CAGTGCCTGG CCGAGCAGCT CGACGACTTC CTCACCCTCG ACGCCTACCG CCACATCGTC CGCCTCGTCC CCTCCTCCCG CATCTAA |
Protein |
| >Mp8g16290.1 MAGGVRGGLP AGVEIRGEFR PCYESILTHE ALAFVAALER EFRPRVKYVL QCRKEQQARF DAGELPRFDP ATAAIRDGDW TCAPIPDVIA DRRVEITGPV ERKMIINALN SGAKMFMADF EDSLAPTWDN IVRGQINLRD AVNRTITFED TARNKKYELK EKTAVLLVRP RGWHLPEAHL EIDGEPATGA LVDFGLYYFH NQAAFRAAHG QSGPFFYLPK MQHAREAALW NAVFERAQAA AGAPRGSVRA TVLIETLPAV FQMHEILYAL RDHSAGLNCG RWDYIFSFIK TVRAHADRLL PDRVLVGMTQ PFLRNYTELL IQTCHRRGVH AMGGMAAQIP IRDDKAANDK AAELVRADKL REVRAGHDGT WAAHPGLVPM VLEVFDANMP GANQVHVKRD DVSVTCQDLL QMPKGVRTLE GLRLNTRVGV QYVAAWLGGT GSVPLYNLME DAATAEISRV QNWQWIKYGA MLDGELVPTR VTRDVFQRVL AEELERIERE VGAPRFRAGR YQQAAQLFAR QCLAEQLDDF LTLDAYRHIV RLVPSSRI |