Mp8g16760



Description

Annotation

Database ID Description
Pfam PF17292 POB3-like N-terminal PH domain
Gene3D G3DSA:2.30.29.30 -
PANTHER PTHR45849 FACT COMPLEX SUBUNIT SSRP1
PRINTS PR00887 Structure-specific recognition protein signature
SMART SM01287 Rtt106_2
SUPERFAMILY SSF47095 HMG-box
FunFam G3DSA:2.30.29.150:FF:000001 Fact complex subunit ssrp1
FunFam G3DSA:1.10.30.10:FF:000016 FACT complex subunit SSRP1
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.30.29.150 -
FunFam G3DSA:2.30.29.220:FF:000002 FACT complex subunit SSRP1
Gene3D G3DSA:1.10.30.10 High mobility group box domain
Pfam PF08512 Histone chaperone Rttp106-like, middle domain
Gene3D G3DSA:2.30.29.220 -
CDD cd22013 HMG-box_AtSSRP1
SUPERFAMILY SSF50729 PH domain-like
FunFam G3DSA:2.30.29.30:FF:000214 FACT complex subunit SSRP1
SMART SM00398 hmgende2
Pfam PF00505 HMG (high mobility group) box
CDD cd13231 PH2_SSRP1-like
ProSiteProfiles PS50118 HMG boxes A and B DNA-binding domains profile.
CDD cd13230 PH1_SSRP1-like
Pfam PF03531 Structure-specific recognition protein (SSRP1)
Pfam PF21103 SSRP1 PH domain
KEGG K09272 FACT complex subunit SSRP1/POB3
KOG KOG0526 Nucleosome-binding factor SPN, POB3 subunit; [KLB]
MapolyID Mapoly0030s0009 -
GO GO:0005634 nucleus
GO GO:0031491 nucleosome binding
GO GO:0035101 FACT complex
GO GO:0003677 DNA binding
GO GO:0042393 histone binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHMGBOX3 transcription factor, HMG-box Published

Transcript models

Transcript ID Location Sequences Extract region
Mp8g16760.1 chr8:21555080..21562687 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g16760.2 chr8:21555924..21562687 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g16760 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g16760 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.