Mp8g17020



Description

Annotation

Database ID Description
PANTHER PTHR10378 LIM DOMAIN-BINDING PROTEIN
Pfam PF01803 LIM-domain binding protein
MobiDBLite mobidb-lite consensus disorder prediction
Coils Coil Coil
MapolyID Mapoly0030s0035 -
GO GO:0000122 negative regulation of transcription by RNA polymerase II
GO GO:0005634 nucleus
GO GO:0005667 transcription regulator complex
GO GO:0045944 positive regulation of transcription by RNA polymerase II

Nomenclature

Gene symbol Product Transcript ID Status
MpLIM2 transcription factor, LIM-domain Published

Transcript models

Transcript ID Location Sequences Extract region
Mp8g17020.1 chr8:21813283..21821200 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp8g17020 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp8g17020 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.